Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03357 ATGGATGTGGAACTCCCAGTCCCAGAATCTGCAAATGAGTCTCAACAACAAAAATTTGCTCTTCCTGTGGATTCAGAACACAAGGCCACTGAATTTAGATTATTTTCCTTTGCTAAGCCTCACATGAGGACATTTCATCTATCTTGGTTCTCTTTCTTCGCATGCTTTGTGTCTAGTTTTGCTGCAGCACCCCTTGTTCCTATAATCCGTGACAACCTGAACCTCACAGCCACTGACATTGGAAATGCTGGGGTTGCATCAGTTTCAGGTGCTGTTTTCGCTAGAATTGCCATGGGAACAGCTTGTGACTTGGTTGGACCTCGTCTTGCTTCTGCTTCTCTCATTCTCCTCACTGCACCAGCTGTGTACTTCACTTCCATTATCTCCTCAGCTACCTCTTACCTTCTTGTTCGCTTCTTCACTGGCTTTTCCTTAGCCACTTTTGTCTCAACACAGTTCTGGATGAGCTCCATGTTTTCCACCACAGTGGTTGGTTCAGCCAATGGACTAGCAGGTGGATGGGGAAACCTTGGAGGAGGAGCCACACAACTCATCATGCCCCTTGTGTTTTCCCTCATCAGTGATATTGGTGCAACCAAATTCACAGCATGGAGAATTGCGTTTTTCATCCCTGCTCTGTTGCAAATGATGACAGCATTTTCCATATTGATATTTGGGCAGGACATGCCAGATGGGAATTTCCATCGCTTGAAGAAGTCAGGGGATAAACCAAAAGATGAATTCTCAAAAGTTCTGTTTCATGGGGTTACCAATTATAGAGGGTGGATTTTAGCATTGACTTATGGCTATTGCTTTGGGGTAGAGTTGACTGTGGACAATATCATAGCTGAATACTTCTATGATAGATTTAATCTGAAACTCCACACTGCTGGAATCATTGCTGCAAGCTTTGGCTTAGCTAATTTGTTTTCTAGACCTGGTGGGGGTTATCTATCAGATGCAATGGCAAAGAGGTTTGGGATGAGGGGAAGGTTATGGGCCTTATGGCTATGCCAAACCTTGGCTGGTGTGTTCTGCATAATTCTTGGTTTGGTAGGATCTTTAAGTGTATCCATCATTGTTATGATCATATTCTCTGTGTTTGTTCAAGCTGCATGTGGGCTGACCTTTGGAATTGTTCCTTTTGTCTCAAGAAGGTCATTAGGGGTCATATCTGGAATGACAGGAGGAGGAGGCAATGTGGGAGCAGTTGTTACCCAGCTAATTTTCTTCAAAGGATCAAGGTTTTCAAAAGAAAGGGGAATAACACTAATGGGTATCATGATCATAATATGTACCCTGCCTATATGCTTAATTTACTTTCCACAATGGGGTGGGATGTTTTTTGGTCCTTCATCTAACAAGGTCACAGAAGAAGATTACTACTTGGGTGAGTGGAACTCAAAGGAAAAGGAGAAAGGCTCTCATCATGCAAGCTTGAAATTTGCTGATAACAGCAGAAGTGAAAGGGGCAGAAAACAAAACACTTCAACTAGGCCTTCTGAGGATGTCACACCACCACATGTTTGA 1530 0.4327 MDVELPVPESANESQQQKFALPVDSEHKATEFRLFSFAKPHMRTFHLSWFSFFACFVSSFAAAPLVPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTACDLVGPRLASASLILLTAPAVYFTSIISSATSYLLVRFFTGFSLATFVSTQFWMSSMFSTTVVGSANGLAGGWGNLGGGATQLIMPLVFSLISDIGATKFTAWRIAFFIPALLQMMTAFSILIFGQDMPDGNFHRLKKSGDKPKDEFSKVLFHGVTNYRGWILALTYGYCFGVELTVDNIIAEYFYDRFNLKLHTAGIIAASFGLANLFSRPGGGYLSDAMAKRFGMRGRLWALWLCQTLAGVFCIILGLVGSLSVSIIVMIIFSVFVQAACGLTFGIVPFVSRRSLGVISGMTGGGGNVGAVVTQLIFFKGSRFSKERGITLMGIMIIICTLPICLIYFPQWGGMFFGPSSNKVTEEDYYLGEWNSKEKEKGSHHASLKFADNSRSERGRKQNTSTRPSEDVTPPHV. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03357 509 MobiDBLite consensus disorder prediction 470 509 - -
Seca11g03357 509 Gene3D MFS general substrate transporter like domains 246 445 IPR036259 -
Seca11g03357 509 Gene3D MFS general substrate transporter like domains 36 234 IPR036259 -
Seca11g03357 509 MobiDBLite consensus disorder prediction 470 497 - -
Seca11g03357 509 CDD MFS_NRT2_like 45 438 IPR044772 GO:0015112
Seca11g03357 509 FunFam High affinity nitrate transporter 2.5 37 233 - -
Seca11g03357 509 Pfam Major Facilitator Superfamily 49 405 IPR011701 GO:0022857|GO:0055085
Seca11g03357 509 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 10 493 IPR044772 GO:0015112
Seca11g03357 509 FunFam Nitrate transporter 2.1 245 446 - -
Seca11g03357 509 SUPERFAMILY MFS general substrate transporter 30 439 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03357 Seca-Chr11 78297248 78299551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03357 17 501 Inorganic Solute Cotransporters AT1G12940 74.433 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03357 K02575 - gmx:100787888 855.514