Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03348 ATGATGCAGTTCCCATCCCTGCTTGTTTTCTCGCATCCCAAACACCAATTTTGGTGCTTATCCAATAACAAAAACCAAAGAGAAAAAAAAGGGTTAATTCCAATTTCAATGCCTTCTTCTTCTTCTTCTTCTTCTGCATCATCTTTTCTGCTCCTCTTCTTCCTCTGTTGCTTTGCAGCTCCTGTTCTGTCTGAACCAAGAGCCAAAAGGGCAGCTTTGTTATGCACCAACAGAACCGCAACATCAATGCCTCAACGTCAGGTTTTCATAGCAAACTTTTTGGCTGCAATGGATGCGCTGACCCCTCTGATCTCAAGACAAAGGTATGGTTCTGTTGTTAATGGGACTCAAAACGCCACCGTTTATGCTTTTGGTGAGTGCATGAAGGATCTTTCTCAATCAGATTGCAACGTGTGCGTTGCACAGTGCAAAACCCAGATCCTCAGTTGTTTGCCATTTCAGAAAGGAACTCGTGGTGGAAGGCTCTTCTTTGATGGGTGTTACCTCAGGTATGATGACTACAATTTCTTCAATGAGAGTCTCAGTGTTCAAGACACCACCGTGTGTGGCACAAGTGATTTTGGTGGGAATGTTAGTGTTTATAAGGCCAATGCTTTGGAGTTAGTGAGAAATTTGAGCGTGTTGGCGCCAAAAAATGATGGGTTCTTTGTGGGGTCTGTGAATAGAAAGAATGTTTCTGTTTATGGGTTGGCTCAGTGCTGGGAGTTTGTCAATGGCAGTGCCTGCCAGAACTGTTTGGCAGATGCTGTTACTAGGATTGCTTTGTGTACTACAAAAGAAGAAGGGAGGGCATTGAATTCTGGTTGTTACTTGAGGTATTCCACACAAAAATTCTATAACAATTCAACCAATGATGCAGCTGCAGGAAATCATGGACACAGGAAAATAGCTACAATTCTGGCTGCATCTTCTGCTGCTGTGGCTCTTCTGCTGGTTGTTGCAACAGTTATCTTCTTTATAAGGAAGAATGTAATGAAGAGGAGAAAAGAAAGAAGACAGTTTGGTGCACTTTTGGACACAGTGAACAAGTCCAAGCTAAATATGGCATATGAAATTCTTGAAAATGCAACAGATTACTTCAATGATGCCAATAAGTTAGGACAAGGAGGATCCGGTTCAGTTTATAAAGGAGTTATGCCAGATGGAAGTACTGTGGCTGTTAAAAGGCTTAGCTTTAACACAACACAATGGGCAGATCATTTCTTCAATGAGGTTAATTTGATCAGTGGCATTCATCACAAAAATCTTGTAAAGCTTTTGGGGTGCAGCATTACAGGACCTGAAAGCCTCCTTGTTTATGAATATGTGCCTAACCACAGTCTCCATGATCACCTTTCTGGTGCTCCAGTTAGAAGGGTTTCTCAACCGATGACTTGGGAAATCAGGCATAAGATCATATTAGGAATTGCAGAGGGCATGGCTTACCTTCATGAGGAGTCACATGTGAGAATCATTCATAGGGATATAAAATTGAGCAACATTCTGCTCGAAGAGGATTTCACACCCAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCAGAAGACCAGTCTCACATTAGCACAGCCATTGCTGGGACACTGGGTTATATGGCTCCGGAGTATGTTGTTCGTGGGAAGTTGACTGAGAAAGCAGATGTATACAGTTTCGGAGTTCTAGTTGTTGAAATTGTATCTGGCAAAAGAAACAGTTCCTTTGTTCTAAATTCATCCTCTATCCTACAAACGGTAACTGTTTGGAGCCTTTATGGATCAAATAGGCTATCTGAAATAGTTGATCCGACCCTAGAGGGTAATTTTCCTGCAGAGGAAGCATGCAAACTACTTCAGATAGGGTTGCTTTGTGCACAAGCATCTGCAGAGTTAAGACCATCAATGTCAGAAGTTGTTAAAATGATTAAAGACAATCATGAAATTCCTCAGCCAACACAACCACCATTTATTAATTCTGGTAGTTCAGAACTCAGCAAATCTTGTTTACCTGGATATAACAATTTTCAGCATGGATCCAATACCCAGTCTTCAGGGGATACCATGACTGAAAGTCTACTTGAGCCTAGATGA 2085 0.4158 MMQFPSLLVFSHPKHQFWCLSNNKNQREKKGLIPISMPSSSSSSSASSFLLLFFLCCFAAPVLSEPRAKRAALLCTNRTATSMPQRQVFIANFLAAMDALTPLISRQRYGSVVNGTQNATVYAFGECMKDLSQSDCNVCVAQCKTQILSCLPFQKGTRGGRLFFDGCYLRYDDYNFFNESLSVQDTTVCGTSDFGGNVSVYKANALELVRNLSVLAPKNDGFFVGSVNRKNVSVYGLAQCWEFVNGSACQNCLADAVTRIALCTTKEEGRALNSGCYLRYSTQKFYNNSTNDAAAGNHGHRKIATILAASSAAVALLLVVATVIFFIRKNVMKRRKERRQFGALLDTVNKSKLNMAYEILENATDYFNDANKLGQGGSGSVYKGVMPDGSTVAVKRLSFNTTQWADHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEYVPNHSLHDHLSGAPVRRVSQPMTWEIRHKIILGIAEGMAYLHEESHVRIIHRDIKLSNILLEEDFTPKIADFGLARLFPEDQSHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLVVEIVSGKRNSSFVLNSSSILQTVTVWSLYGSNRLSEIVDPTLEGNFPAEEACKLLQIGLLCAQASAELRPSMSEVVKMIKDNHEIPQPTQPPFINSGSSELSKSCLPGYNNFQHGSNTQSSGDTMTESLLEPR. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03348 694 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 122 674 - -
Seca11g03348 694 SMART serkin_6 367 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03348 694 Pfam Salt stress response/antifungal 75 174 IPR002902 -
Seca11g03348 694 Pfam Salt stress response/antifungal 196 282 IPR002902 -
Seca11g03348 694 MobiDBLite consensus disorder prediction 673 688 - -
Seca11g03348 694 CDD STKc_IRAK 373 641 - -
Seca11g03348 694 FunFam Cysteine-rich receptor-like protein kinase 2 332 442 - -
Seca11g03348 694 Gene3D Transferase(Phosphotransferase) domain 1 443 651 - -
Seca11g03348 694 MobiDBLite consensus disorder prediction 673 694 - -
Seca11g03348 694 ProSiteProfiles Gnk2-homologous domain profile. 69 176 IPR002902 -
Seca11g03348 694 FunFam Cysteine-rich receptor-like protein kinase 2 68 176 - -
Seca11g03348 694 SUPERFAMILY Protein kinase-like (PK-like) 355 658 IPR011009 -
Seca11g03348 694 Pfam Protein kinase domain 368 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03348 694 ProSiteProfiles Gnk2-homologous domain profile. 182 285 IPR002902 -
Seca11g03348 694 Gene3D Phosphorylase Kinase; domain 1 327 442 - -
Seca11g03348 694 FunFam Cysteine-rich receptor-like protein kinase 2 443 648 - -
Seca11g03348 694 ProSiteProfiles Protein kinase domain profile. 367 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03348 694 FunFam Cysteine-rich receptor-like protein kinase 3 185 285 - -
Seca11g03348 694 Gene3D - 184 285 IPR038408 -
Seca11g03348 694 Gene3D - 70 176 IPR038408 -
Seca11g03348 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
Seca11g03348 694 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03348 Seca-Chr11 78060586 78064519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03348 60 535 Receptor kinase-like Gene Family AT1G70530 62.683 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca11g03348 Pkinase 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03348 - - gmx:100787359 1011.52