Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03347 ATGATTTCTCTATTACTATCAGCAACAGTAATGGCAGAACCAAGAGCCAAAGCAATCAAAACAATATGTGGACATCAGCTAGAGCACAACACCACTATCTTTGTTCCAAATTTTGTTGCAACAATGGACAAGATCAGTGAACAGATGCGCAATACTGGCTACGGCACAGCAGTTGCAGGGACAGGAGGAGCTGACACTAACTATGGACTTGCTCAGTGCTATGGAGATCTTTCATTACTTGACTGTGTTTTATGTTATGCTGAGGCACGCACGGTTCTCCCCAAATGCTTCCCTAACAATGGTGGTCGCATATACCTTGATGGTTGCTTCATGAGGGCTGAAAACTATAGCTTCTATAATGCGTATACAGGACCAGGAGATGAGGCTGTTTGTGAAAACACAACCAAGAAGAATAAGAGGTTTCAAGCAGCAGCAAAGAAGGCAGTTCTGTATGCAGTTCAAGCTGCCCCCAACAATAAGGGCTATGCAAGTGAGAAGGTTTCTGTGTCAGGAACAACAAATGAGTCAGCTTATGTTCTGGCTAATTGTTGGAGGAGTTTGGACATAAGGTCTTGCAAAGCATGTCTTGAGAATGCATCTTCTTCAATACTGGGATGCTTGCCCTGGTCAGAAGGGCGAGCACTGAACACTGGATGCTTCTTGAGGTACTCAGATATGGATTTTCTTAACAAGGAACCAGAAAATGGAAGTTCAAGAGGTAATGCAGTAGTAGTAATAGTGATTGCAGTAGTCAGTGCAGTGATTGTTTTGGTGGTTGGAATAGCTGTTGGGGTTTATATCCACAAACACAGATATATTCAAAAGAAACGGAGAGGTTCAAATGATGCTGCAGAAAAGTTAGCTAAGAACCTTTATCACAATAGCTTGAACTTCAAGTACTCTACACTGGAGAAGGCTACTGAATCTTTTGATGAAGCTAACAAGATTGGACATGGAGGATTTGGAACAGTTTATAAAGTAATTATTTCCTCTACAGACCTAAATTCCCTCCATTTTACATATCAAAACCACTCTTACAATTTACTATTGCAGGGAGTTCTTCCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAATAACAGACATAGAGCAGCAGATTTCTACAATGAAGTCAACATAATTAGTAGTGTGGAACACAAGAATCTAGTCAGATTGTTAGGATGCAGTTGTTCAGGGCCAGAAAGCCTGCTTGTATACGAATTTCTACCTAACCTAAGTCTTGATCGCTTCATATTTGATAAAGGCAAAGGTAGAGAACTAAACTGGGAGAAGAGATATGACATTATCATTGGGACAGCTGAAGGATTGGTTTATTTGCATGAGAACTCCAAAATTAGGATAATTCATAGAGATATAAAAGCCAGCAACATCTTATTGGATGCAAAGCTCCGTGCTAAAATTGCAGATTTTGGTTTGGCCAGGTCCTTTCAAGAAGATAAGAGCCACATCAGTACAGCTATTGCAGGAACATTGGGTTATATGGCTCCAGAGTACCTAGCACATGGTCAGTTGACAGAGAAAGCAGACGTGTATAGTTTTGGAGTGTTACTGCTAGAAACAGTCACTGGGAGACAGAACAACAGGTGCAAAACATCAGAATATTTGGACAGCCTAGTTATAGTGACTTGGAGGCATTTTCAGTCAAGGACTACAGAACAATTAATTGATCCACATCTAGTGTCAGACAACAACCATAATAACAATGTTGTGAATGAGATTTTAAGAGTGGTGCACATAGGACTTCTATGCACACAAGAAATCCCTTCCTTACGACCATCTATGTCAAAGGCACTACAGATGCTAACAAAGGAGGAGGAACACTTGCCAGCTCCCTCTAATCCACCCTTTATAGATGAAAGTACTATGGAACTCCATAACCAAAATGATGACCCGTTTTATCCTCTCAATGCAGCAGACTCACTTGCTACTATGTCCCATAGCTCTTTTTATCCCAGGTAA 1986 0.4074 MISLLLSATVMAEPRAKAIKTICGHQLEHNTTIFVPNFVATMDKISEQMRNTGYGTAVAGTGGADTNYGLAQCYGDLSLLDCVLCYAEARTVLPKCFPNNGGRIYLDGCFMRAENYSFYNAYTGPGDEAVCENTTKKNKRFQAAAKKAVLYAVQAAPNNKGYASEKVSVSGTTNESAYVLANCWRSLDIRSCKACLENASSSILGCLPWSEGRALNTGCFLRYSDMDFLNKEPENGSSRGNAVVVIVIAVVSAVIVLVVGIAVGVYIHKHRYIQKKRRGSNDAAEKLAKNLYHNSLNFKYSTLEKATESFDEANKIGHGGFGTVYKVIISSTDLNSLHFTYQNHSYNLLLQGVLPDGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNLSLDRFIFDKGKGRELNWEKRYDIIIGTAEGLVYLHENSKIRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLETVTGRQNNRCKTSEYLDSLVIVTWRHFQSRTTEQLIDPHLVSDNNHNNNVVNEILRVVHIGLLCTQEIPSLRPSMSKALQMLTKEEEHLPAPSNPPFIDESTMELHNQNDDPFYPLNAADSLATMSHSSFYPR. 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03347 661 Gene3D Phosphorylase Kinase; domain 1 270 410 - -
Seca11g03347 661 CDD STKc_IRAK 316 612 - -
Seca11g03347 661 FunFam Cysteine-rich receptor-like protein kinase 2 411 618 - -
Seca11g03347 661 Gene3D Transferase(Phosphotransferase) domain 1 411 618 - -
Seca11g03347 661 Gene3D - 16 118 IPR038408 -
Seca11g03347 661 Gene3D - 128 228 IPR038408 -
Seca11g03347 661 SUPERFAMILY Protein kinase-like (PK-like) 292 640 IPR011009 -
Seca11g03347 661 ProSiteProfiles Gnk2-homologous domain profile. 123 228 IPR002902 -
Seca11g03347 661 Pfam Protein tyrosine and serine/threonine kinase 314 608 IPR001245 GO:0004672|GO:0006468
Seca11g03347 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Seca11g03347 661 ProSiteProfiles Gnk2-homologous domain profile. 16 118 IPR002902 -
Seca11g03347 661 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 68 638 - -
Seca11g03347 661 FunFam Cysteine-rich receptor-like protein kinase 2 16 118 - -
Seca11g03347 661 ProSiteProfiles Protein kinase domain profile. 310 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03347 661 SMART serkin_6 310 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03347 661 Pfam Salt stress response/antifungal 131 225 IPR002902 -
Seca11g03347 661 Pfam Salt stress response/antifungal 32 116 IPR002902 -
Seca11g03347 661 FunFam Cysteine-rich receptor-like protein kinase 3 127 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03347 Seca-Chr11 78020718 78024238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03347 1 661 Receptor kinase-like Gene Family AT1G70520 63.759 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca11g03347 PK_Tyr_Ser-Thr 2.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03347 - - ccaj:109816764 1039.25