Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03346 ATGGAGGAGGAAATGTATGGAATGCCGTCGGCAGCGGCGGCAGAGTACTCGGACAAGGCGCTGATGACGCCGGAGAGTGTGATATTCCCGGCAGAGTATCACAGTTACCTGATGTCTTCCGGCGGCCGGATTCCAATGTTCGGATCCGACGAGTTACTCTCCGCCATCACCGCCACCGCCGCCACTAGCGCCGAAGCCGAACTCTCCGGCAACAATATCATCCCCGAAATTCAGCGCCACCACGACGGTTCCTCTCTCATCAAAGCAAAAATCGCCTCTCACCCTCACTACCCTCGCCTCCTCCAAGCCTACATCGATTGCCAAAAGGTAGGAGCGCCTCCAGAAATTGCGTGTTTGTTAGACGAAATCCGGCGAGAAAACGACGTTTACAAGAGAGACGTTGTTTCCACGTGTTATGGAGCCGATCCCGAGCTCGATGAGTTTATGGAAACCTACTGTGAGTTGCTGGTGAAATATAAATCTGATCTGACGCGGCCTTTTGACGAAGCTACCACCTTCCTCAACAAGATCGAAACTCAACTCAGCGATCTCTGCACTGGTGCTTCCGTTCCTGCCCTTTCCGTTTGGCTAGATGATGGTGGTGTATCTTCAGAAGATGGTTTTAGTAATGGAGATGGCGATACCCAAGATAGTCAATTACGGGTTGAAGATCGAGAGCTTAAGGATAAACTTTTACGCAAGTTTGGAAGTCACATTGGTTCTTTGAAATTGGAATTTTCAAAGAAGAAAAAGAGGGGTAAGTTACCGAAAGACGCCAGGCAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAAGTGATAAGATTGCGCTGGCTAATTCAACTGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGATAATCTCACCGGACAGTACCATACTGATGAATGA 990 0.4808 MEEEMYGMPSAAAAEYSDKALMTPESVIFPAEYHSYLMSSGGRIPMFGSDELLSAITATAATSAEAELSGNNIIPEIQRHHDGSSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLDEIRRENDVYKRDVVSTCYGADPELDEFMETYCELLVKYKSDLTRPFDEATTFLNKIETQLSDLCTGASVPALSVWLDDGGVSSEDGFSNGDGDTQDSQLRVEDRELKDKLLRKFGSHIGSLKLEFSKKKKRGKLPKDARQTLLQWWNVHYKWPYPTESDKIALANSTGLDQKQINNWFINQRKRHWKPSENMQFSMMDNLTGQYHTDE. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03346 329 Pfam ELK domain 226 247 IPR005539 GO:0003677
Seca11g03346 329 Gene3D - 245 319 - -
Seca11g03346 329 ProSiteProfiles 'Homeobox' domain profile. 246 309 IPR001356 GO:0003677
Seca11g03346 329 SMART HOX_1 248 313 IPR001356 GO:0003677
Seca11g03346 329 FunFam Homeobox protein knotted-1-like 2 251 313 - -
Seca11g03346 329 SMART KNOX1_2 85 129 IPR005540 GO:0003677|GO:0005634
Seca11g03346 329 SMART KNOX2_2 135 186 IPR005541 GO:0003677|GO:0005634
Seca11g03346 329 ProSitePatterns 'Homeobox' domain signature. 284 307 IPR017970 GO:0000981|GO:0006355
Seca11g03346 329 SMART ELK_2 226 247 IPR005539 GO:0003677
Seca11g03346 329 SUPERFAMILY Homeodomain-like 247 321 IPR009057 -
Seca11g03346 329 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 317 - -
Seca11g03346 329 ProSiteProfiles ELK domain profile. 226 246 IPR005539 GO:0003677
Seca11g03346 329 Pfam KNOX2 domain 139 185 IPR005541 GO:0003677|GO:0005634
Seca11g03346 329 Pfam Homeobox KN domain 266 305 IPR008422 GO:0003677|GO:0006355
Seca11g03346 329 CDD homeodomain 258 310 IPR001356 GO:0003677
Seca11g03346 329 Pfam KNOX1 domain 87 128 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03346 Seca-Chr11 77848825 77858478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03346 5 329 Homeobox Transcription Factor Family AT1G23380 65.579 2.37e-145 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca11g03346 KNOX2 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03346 - - gmx:100786454 518.079