Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03345 ATGACTAAATTTCTTTGGCAACAAAATGGTGAGAACACCTATAATGAACCAACTCAGCCACAAATTCAACCCTCCTATACTGATGAGTCAGCTCAATGGATTCAACTCCAAGATCAAATCTTTGAACAAACCCTCATGAACTTCCCAGAAGGCACCCCAAATAGGTGGGAAAAAGTTGCTGAAAACATGGTCAAGTCACTAACGACACTTAAGGATCGCTATGAAGCTTTGTTCCATGACCTTTCAGAGATTATGTCAGGTCAAGTCAAGTTGCCAAGTAGTTTAGATGACTCAACATCATCAGAGGCATCAATCCAGAATGGTGTTTCAATGGAGTTAGCCCCTCAAAAACGAAAGAAAGTGGTCCCTTGGACTAAAGAGGAACATAGATTTAAACTAGATTGCACTAGTTTAATGCATTTCAAGATTTCACATCCCCTTTATCTTTTTTGTGACCGGTTATTCCTTATTGGCTTTAAGGAATATGGCAAGGGTTATTGGAAAAACATTGCAAGAAATGTTGTCACCACAAGAACTGCATCACAAGTTGCAAGCCATGCCCAGAAATATTTTAATCACAAAAATGCTTCAATCAAAGTGAAGAAAAGAAAAAGCATCCATGACACAAGGGAGAGTGATTTGGCCACTCACCTCATTGATCAACAAAATTCAAATTCAATTGTTGCACTAAACGATAAGCCTCAACAAAATTGGTTTCGTGTTCCAGAAGTTATCGAACAATTACATGAAATGCAAGAAGTACAAGAAATGCTCCAATTCAACCCACTAAGTGATATTGGCTTCCTGTTCGAACACGGAAATTAA 825 0.383 MTKFLWQQNGENTYNEPTQPQIQPSYTDESAQWIQLQDQIFEQTLMNFPEGTPNRWEKVAENMVKSLTTLKDRYEALFHDLSEIMSGQVKLPSSLDDSTSSEASIQNGVSMELAPQKRKKVVPWTKEEHRFKLDCTSLMHFKISHPLYLFCDRLFLIGFKEYGKGYWKNIARNVVTTRTASQVASHAQKYFNHKNASIKVKKRKSIHDTRESDLATHLIDQQNSNSIVALNDKPQQNWFRVPEVIEQLHEMQEVQEMLQFNPLSDIGFLFEHGN. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03345 274 SUPERFAMILY Homeodomain-like 152 194 IPR009057 -
Seca11g03345 274 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 29 240 IPR043363 -
Seca11g03345 274 SMART sant 29 80 IPR001005 -
Seca11g03345 274 SMART sant 120 193 IPR001005 -
Seca11g03345 274 SUPERFAMILY Homeodomain-like 32 80 IPR009057 -
Seca11g03345 274 CDD SANT 123 191 IPR001005 -
Seca11g03345 274 Gene3D - 152 196 - -
Seca11g03345 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 195 IPR017930 -
Seca11g03345 274 Pfam Myb-like DNA-binding domain 152 191 IPR001005 -
Seca11g03345 274 NCBIfam myb-like DNA-binding domain, SHAQKYF class 152 194 IPR006447 GO:0003677
Seca11g03345 274 Gene3D - 25 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03345 Seca-Chr11 77622194 77623576 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca11g03345 Myb_DNA-binding 1.8e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03345 - - thj:104823151 166.392