Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03344 TATCCAACATATTTTCTTTATTACATATCAGAGCAATATGACCCGGAGGTGCGCGTTGGTCATTTAAAAAGGTATTCATTCAAAGAGCTTCGAGCTGCAACAGATCATTTCAATTCAAAGAATATTTTAGGAAGGGGTGGCTTTGGAATAGTCTACAAGGGATGCATGAATGATGGATCTGTTGTGGCAGTAAAAAGGCTGAAGGACTACAATGTTGCTGGTGGTGAGATCCAATTTCAAACTGAAGTTGAGACTATAAGTTTGGCTGTGCACCGGAATCTTCTAAGGCTCAGTGGATTTTGTAGTACTCAGAATGAAAGGCTCCTCGTGTATCCTTATATGTCCAATGGCAGTGTAGCTTCTAGATTAAAAGCTAAATTTATTCCCACATCACATGAACACTATATGTTGCATTTATATCCCCTGGATTATGAGGCATGCCTCATTTTTCCTGGTGCCGTGACCACTGCTGCTACAAGTAGCCTTCAGCTAATTGCTCCTTGGCCTATTAGACTTTTTTACCTAATCCTGTCTTTGATTTTGGATTTTATACCAGATCATATTCAAGGTCGACCGGCTTTAAATTGGGCAAGGCGAAAGAGAATAGCTATAGGTACAGCAAGAGGGTTGGTTTATTTGCATGAGCAATGTGACCCTAAAATTATTCACCGTGATGTCAAAGCTGCCAATATATTGCTAGATGAAGACTTTGAAGCAGTTATTGGTGATTCCGGTTTAGCTAAGCTTCTGGATCACAGAGATTCGCATGTGACAACAGCTGTGCGTGGCACTGTTGGTCACATTGCTCCAGAATACTTATCTACAGGTCAGTCATCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTGCTTGAGCTGATCACAGGCCACAAGGCTCTAGATTTTGGGAGAGCAGCAAACCAGAAAGGTGTCATGCTTGATTGGGTTAAGAAGCTCCACAAGGAGGGAAGATTAAGTCAAATGGTGGATAAAGATCTAAAGGGAAACTTTGACTTCATTGAATTGGAAGAGATGGTTCAGGTTGCACTGTTGTGTACACAATTTAATCCTTCCCACCGTCCTAAGATGTCAGAAGTATTAAAGATGTTGGAAGGTGATGGCTTAGCTGAGAGATGGGAGGCTTCACAGAAGATCGAGACGCCAAGGTACTATACTCCATACGTTAAACTAAGGATGCTAATTACAAATTTAATTTTTTGA 1224 0.4093 YPTYFLYYISEQYDPEVRVGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKGCMNDGSVVAVKRLKDYNVAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQNERLLVYPYMSNGSVASRLKAKFIPTSHEHYMLHLYPLDYEACLIFPGAVTTAATSSLQLIAPWPIRLFYLILSLILDFIPDHIQGRPALNWARRKRIAIGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVIGDSGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHKEGRLSQMVDKDLKGNFDFIELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQKIETPRYYTPYVKLRMLITNLIF. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03344 407 Gene3D Transferase(Phosphotransferase) domain 1 180 391 - -
Seca11g03344 407 PIRSF ILK 13 136 - -
Seca11g03344 407 PIRSF ILK 184 386 - -
Seca11g03344 407 FunFam Somatic embryogenesis receptor-like kinase 1 178 391 - -
Seca11g03344 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Seca11g03344 407 Gene3D Phosphorylase Kinase; domain 1 6 113 - -
Seca11g03344 407 ProSiteProfiles Protein kinase domain profile. 37 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03344 407 SMART serkin_6 37 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03344 407 Pfam Protein tyrosine and serine/threonine kinase 40 371 IPR001245 GO:0004672|GO:0006468
Seca11g03344 407 SUPERFAMILY Protein kinase-like (PK-like) 21 377 IPR011009 -
Seca11g03344 407 ProSitePatterns Protein kinases ATP-binding region signature. 43 65 IPR017441 GO:0005524
Seca11g03344 407 FunFam Somatic embryogenesis receptor kinase 1 6 113 - -
Seca11g03344 407 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 19 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03344 Seca-Chr11 77617929 77619924 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03344 5 406 Receptor kinase-like Gene Family AT1G60800 63.007 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca11g03344 PK_Tyr_Ser-Thr 1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03344 - - gmx:100784164 558.14