Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03340 ATGGAACTTAATGGTTCAATTTTTTGGCTACTGTGTTTACTTCTTGTGGCTTTGTTGGAGATGTCTTCTGCTGCTCTTTCTCCTTCTGGGATAAATTATGAAGTTGTAGCTCTGATGGCCATTAAGAATAACTTGATTGATCCCCACAATGTCCTGGAGAATTGGGATATTAATTCTGTTGATCCTTGTAGCTGGAGGATGATTACTTGTTCTTCAGATGGCTACGTTTCTGCATTGGGATTGCCTAGTCAGAATTTGTCTGGTACTCTATCTCCTGGAATTCGAAACCTTACTAACTTGCAGTCTGTGTTGCTTCAGAATAATGCCATTTCTGGTCCAATTCCTGCTGCAATAGGAAAGCTGGAAAAACTTCAGACACTTGACCTCTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGCCTCATGAACCTAAATTATTTGCGGTTGAATAATAACAGCCTTACAGGAACCTGCCCTCAGTCACTTAGCAACATTGAAGGTCTAACCCTTGTGGACCTGTCTTATAACAATCTGAGTGGTTCCTTGCCAAGAATATCAGCAAGAACATTCAAGATTGTGGGTAACCCATTAATTTGTGGTCCAAAAGAAAATAACTGTTCTACTGTGTTGCCAGAGCCACTTTCCTTCCCTCCAGATGCTTTAAGAGCTCAATCAGACTCTGGTACAAAAAGCCATCGTGTGGCAATTGCTTTTAGTGCAAGTTTTGGTTCTGCTTTTGTTGTTGTGATTATTGTTGGGTTTCTCATTTGGTGGCGGTATAGACACAACCAGCAAATATTCTTTGACGTTAATGAGCAATATGACCCGGAGGTGCGCCTTGGTCATTTAAAAAGGTATTCATTCAAAGAGCTTCGAGCTGCAACAGATCATTTCAATTCAAAGAATATTTTAGGAAGGGGTGGCTTTGGAATAGTCTACAAGGGATACATGAATGATGGATCTGTTGTGGCAGTTAAAAGGCTGAAGGACTACAATATTGCTGGTGGTGAGATCCAATTTCAAACTGAAGTTGAGACCATAAGTTTGGCTGTGCACCGGAATCTTCTAAGGCTCAGTGGATTTTGTAGTACTCAGAATGAAAGGCTCCTTGTGTATCCTTATATGTCCAATGGCAGTGTAGCTTCTAGATTAAAAGATCATATTCAAGGTCGACCGGCTTTAAATTGGGCAAGGCGGAAGAGAATAGCTATAGGTACAGCAAGAGGGTTGGTTTATTTGCATGAGCAATGTGACCCTAAAATTATTCACCGTGATGTCAAAGCTGCCAATATATTGCTAGATGAAGACTTTGAAGCAGTTGTTGGTGATTTCGGTTTAGCTAAGCTTCTGGATCACAGAGATTCACATGTGACAACAGCTGTGCGTGGCACTGTTGGTCACATTGCTCCAGAATACTTATCTACAGGTCAGTCATCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTGCTTGAGCTGATCACAGGCCACAAGGCTCTAGATTTTGGGAGAGCAGCAAACCAGAAAGGTGTCATGCTTGATTGGGTACTCTCTTTCTCCATGCTTTCCCTTTTCTCTGTTAAGAAGCTCCACAAGGAGGGAAGATTAAGTCAAATGGTGGATAAAGATCTAAAGGGCAACTTTGACTTGATTGAATTGGAAGAGATGGTTCAGGTTGCACTGTTGTGTACACAATTTAATCCTTCCCACCGTCCTAAGATGTCAGAAGTATTAAAGATGTTGGAAGGTGATGGCTTAGCTGAGAGATGGGAGGCTTCACAGAAAATCGAGACGCCAAGGTCCCGGTCTTGTGAAAACAACCCTCAAAGATATTCAGATTTTATTGAAGAATCTTCACTCATAGTAGAAGCTATGGAGCTTTCTGGCCCTAGGTGA 1911 0.4165 MELNGSIFWLLCLLLVALLEMSSAALSPSGINYEVVALMAIKNNLIDPHNVLENWDINSVDPCSWRMITCSSDGYVSALGLPSQNLSGTLSPGIRNLTNLQSVLLQNNAISGPIPAAIGKLEKLQTLDLSNNAFSGEIPSSLGGLMNLNYLRLNNNSLTGTCPQSLSNIEGLTLVDLSYNNLSGSLPRISARTFKIVGNPLICGPKENNCSTVLPEPLSFPPDALRAQSDSGTKSHRVAIAFSASFGSAFVVVIIVGFLIWWRYRHNQQIFFDVNEQYDPEVRLGHLKRYSFKELRAATDHFNSKNILGRGGFGIVYKGYMNDGSVVAVKRLKDYNIAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQNERLLVYPYMSNGSVASRLKDHIQGRPALNWARRKRIAIGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVLSFSMLSLFSVKKLHKEGRLSQMVDKDLKGNFDLIELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQKIETPRSRSCENNPQRYSDFIEESSLIVEAMELSGPR. 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03340 636 FunFam Somatic embryogenesis receptor-like kinase 1 379 606 - -
Seca11g03340 636 SUPERFAMILY L domain-like 32 193 - -
Seca11g03340 636 SUPERFAMILY Protein kinase-like (PK-like) 287 594 IPR011009 -
Seca11g03340 636 SMART serkin_6 302 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03340 636 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Seca11g03340 636 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Seca11g03340 636 ProSiteProfiles Protein kinase domain profile. 302 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03340 636 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Seca11g03340 636 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Seca11g03340 636 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Seca11g03340 636 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Seca11g03340 636 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Seca11g03340 636 Gene3D Transferase(Phosphotransferase) domain 1 379 605 - -
Seca11g03340 636 Pfam Protein kinase domain 303 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03340 636 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 597 - -
Seca11g03340 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03340 Seca-Chr11 77236791 77242469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03340 67 636 Receptor kinase-like Gene Family AT1G60800 75.648 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca11g03340 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03340 - - gmx:100806943 1105.51