Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03334 ATGGCAAGACATATGAACATGGGTGGGAATCTCGATCGGGTCCGTCCGCGTAGCAGGCACCGACACTCGCTTTGGTTTTACGGGCTTTGTAACAAGGGAATCCACACCTTTTTTGATGACCAAGAGCTTCAAAGAGGGGACAAAATCACACCAACACTTCTCAAGGCCATTGAAGAGTCTAGGATTATCATCCCTGTGTTCTCTAATAACTATGCTTTTTCTTCATTTTGCTTGGATGAACTTGTCCACATCATTGAGTGTGTCAAGGCAAAGGGACGTTTGGTTTTGCCCATTTTCTATGATGTGGATCCTTCTCATGTGCGTCATCTTACAGGGAGTTATGGAGATGCACTAGCTAAACATGAGACGAGGTTCACACAAAATAAGGAAAAGTTCATGGATAACTTGCAAAGGTTGCAGAAATGGAAGGTGGCTCTTAACAAAGCGTCTAACTTATCCGGCATGCATTTCAAACTCGGGAATGAATATGAACATGAGTTTATTGGGAAGATAGTTAAAGTGGTCTCCAACAAGATTAATCGCATTCCTATGCACGTTGCGGATTACCCTGTTGGACTGGAGCCTCGTGTGCTTGAGGTAATGTCACTTCTAGATGTTGGATCAGGTGATGGAGTCCACTTGGTAGGGATCTACGGAATTGGTGGAATAGGTAAAACAACACTTGCTCGAGCAGTTTATAATTTTATTGCTGACCATTTTGAAGGTTTATGTTTTCTTGATTGTGTGAGAGAAAAATCAATTAAACATGGATTAGAACATCTCCAAGAGATGCTTCTTTTCGAAATGGTTGGAGAGAATAATGTTATAATAGGAAGTGTTGGTAAAGGAATCTCAATTATAAAGCATAGGCTCCACCGAAAAAAGGTTCTTTTGATTCTTGATGATGTTGACAAACTAGAACAATTGCGTGCTTTTGTTGGAGAGCCTCATTGGTTTGGTTCAGGCAGCAGAATCATCATAACAACTCGAGACAAACATTTGCTATCAAGTCATAGGATAGAGAGAAAATATGAGGTAGATGGGTTAAACAAGAAAGAAGCTCTTGAGTTGTTGAGGTGGAATGCCTTTAGAAACGACCATGTTGATCGAAGTTATAAGGACATCTTGAACCATGTAGTAACTTATGCTGCTGGCCTTCCATTAGCTTTGGAAGTAGTAGGTTCACTTTTGTTCAGGAAAAGCATTCAAGAATGGGAATCTGCATTTGATGGATTTAAAAAAATTCCTTGTAAAAGAATCCAAGATATACTTAGAAAGTTCGTGAATATGAAAGTTTTAAATTTTAATGTCTGTGAATGTTTAACACAAATACCTGATGTAGCTGGCCTCCCAAATTTAGAAAAACTTTTATTTGCATTTTGTAAGAACCTAACTACAATTCATAATTCAGTTGGGTTCTTGGATAAACTTAAAATCTTGAATGCTTATGGTTGCAACAAGCTTAGGAGTTTTCCATCTTTCAAGTTGCCCTCTCTTGAACATCTGGAACTTTCAAATTGCACAAGTCTTGACAGTTTTCCAGAAATATTAGGAAAGATGGAAAATGTAGAAGATCTTCAATTAACGGGCACTGACATAAAAGAATTGCCATTTTCATTTCAAAATCTTACTGGACTTCCGACATTAACTCTGAGTCATTGCAAAATGTTTCAATTACCGTGTAACATTGTCATGATGCCAAAGTTAGCTACCATTATTATGAGGGCAGAGTATGTGTGCCTATCACCGAAACGGGATGAGACTGAAGAAAAAGTGAGCTCAATGCAACCATCAAAAGTAAATGGCCTTTTTCTTGGAGAGTGTACACTATCAGATGAATTTTTGGCAATAGGTCTCACGTGGTTCGCTAACGTGAATTGGTTAGATCTAACAGGTTGTAACTTCACAAGTGTTCATGAATGCATCAAAGAATGCCGCTTTTTACACATGCTTATATTGAACTTTTGCAAGAAACTTCGAGAAATCAAGGGGATTCCACCAATATTAGAATATTTATCTGCAGTAGATTGTGAATCCTTGACTTTCTCAAGTAGAAGCATGTTACTAAAGCAGGAACTGCACGAGGCTGGAAACACACAGTTTCTATTGCCAAGCCCAAGAGCATGGATCCCAGTGTGGTTCGAGCACCAGAGTAGGGGATGGTCAACATCTTTCTGGTTTCGTAACAAGCTCCCCCACTTCGCTCTTTGTCTTGTTTATCCACCAGGATTTTCTAATCATAATGTATTCTTGGTAATCAATGGCAAGGAATTTTTCTATAATGATTTTGCTACTTTTGAAGACAAACGCAATCATTTTCTTATCAATGATTGTTCAAGTCATACACATCTTTATCATGTTCGACCGGAAGGATTTGATGCTAAATTGGATGAAGCACTTTTTGAAAATAAGTGGAATCATGCAGAGGTTATGGCAGAAGATGGATTTAAATTTAAAGAGCAAATTGGCATATATATTGGAATCCATGTATTGAAAGAGAAAAGTGCGTTGGAGAGGAAAGCTGAGAATGATCTTGCCATTATGGTTGGGCACCGGACAATTGTTGTTTGTCCAAGACCTAGTCTATAA 2589 0.3851 MARHMNMGGNLDRVRPRSRHRHSLWFYGLCNKGIHTFFDDQELQRGDKITPTLLKAIEESRIIIPVFSNNYAFSSFCLDELVHIIECVKAKGRLVLPIFYDVDPSHVRHLTGSYGDALAKHETRFTQNKEKFMDNLQRLQKWKVALNKASNLSGMHFKLGNEYEHEFIGKIVKVVSNKINRIPMHVADYPVGLEPRVLEVMSLLDVGSGDGVHLVGIYGIGGIGKTTLARAVYNFIADHFEGLCFLDCVREKSIKHGLEHLQEMLLFEMVGENNVIIGSVGKGISIIKHRLHRKKVLLILDDVDKLEQLRAFVGEPHWFGSGSRIIITTRDKHLLSSHRIERKYEVDGLNKKEALELLRWNAFRNDHVDRSYKDILNHVVTYAAGLPLALEVVGSLLFRKSIQEWESAFDGFKKIPCKRIQDILRKFVNMKVLNFNVCECLTQIPDVAGLPNLEKLLFAFCKNLTTIHNSVGFLDKLKILNAYGCNKLRSFPSFKLPSLEHLELSNCTSLDSFPEILGKMENVEDLQLTGTDIKELPFSFQNLTGLPTLTLSHCKMFQLPCNIVMMPKLATIIMRAEYVCLSPKRDETEEKVSSMQPSKVNGLFLGECTLSDEFLAIGLTWFANVNWLDLTGCNFTSVHECIKECRFLHMLILNFCKKLREIKGIPPILEYLSAVDCESLTFSSRSMLLKQELHEAGNTQFLLPSPRAWIPVWFEHQSRGWSTSFWFRNKLPHFALCLVYPPGFSNHNVFLVINGKEFFYNDFATFEDKRNHFLINDCSSHTHLYHVRPEGFDAKLDEALFENKWNHAEVMAEDGFKFKEQIGIYIGIHVLKEKSALERKAENDLAIMVGHRTIVVCPRPSL. 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03334 862 Pfam TIR domain 30 182 IPR000157 GO:0007165
Seca11g03334 862 Gene3D - 177 343 IPR027417 -
Seca11g03334 862 SUPERFAMILY Toll/Interleukin receptor TIR domain 28 154 IPR035897 -
Seca11g03334 862 SMART AAA_5 211 350 IPR003593 GO:0016887
Seca11g03334 862 PRINTS Disease resistance protein signature 290 304 - -
Seca11g03334 862 PRINTS Disease resistance protein signature 494 510 - -
Seca11g03334 862 PRINTS Disease resistance protein signature 214 229 - -
Seca11g03334 862 PRINTS Disease resistance protein signature 383 397 - -
Seca11g03334 862 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 416 580 IPR044974 GO:0006952
Seca11g03334 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 428 IPR027417 -
Seca11g03334 862 Gene3D - 20 176 IPR035897 -
Seca11g03334 862 Gene3D Ribonuclease Inhibitor 508 695 IPR032675 -
Seca11g03334 862 SMART till_3 11 152 IPR000157 GO:0007165
Seca11g03334 862 Pfam NB-ARC domain 202 420 IPR002182 GO:0043531
Seca11g03334 862 Gene3D - 348 429 IPR042197 -
Seca11g03334 862 SUPERFAMILY L domain-like 426 715 - -
Seca11g03334 862 ProSiteProfiles TIR domain profile. 10 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03334 Seca-Chr11 76873346 76880069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03334 477 680 WRKY Transcription Factor Family AT5G45050 27.184 1.41e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03334 - - vra:106764825 595.89