Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03331 ATGTGTTGGTTTTGTTTCTTCTTTCCACATTGCAACTTTCTGTTCCCAATTCAATATTCTGAGGTGCAGGTAAGTGTCCCATGCAGCAGTTTGTCAACTGTGGTGACAGTCAGATGTGGCCATTGCACAAGCCTCCTCTCTGTTAATATGATGAAAGCTTCCTTTGTCCCTTTCCACCTTTTAGCTTCCTTCAGTCATTTTGAGCCAAAAGAGGGTAGTTCAGAAGAGGATGCAAACATGACTTTGAACAGCCATAATGCAACCATGATGACCTATTCTGATTTTGAGGAAGAGAACGTTATTCAAATGACCAATGTGGTGAATAAACCCTCAGAGAAGAGACAGAGAACACCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTCAAAACCCAGACATGACCCACAAGGAAGCTTTCAGTACAGCTGCAAAAAATTGGGCCTATTTCCCCCCATCTCAGTGTAAAGGAGACCAAGACAGCTGTAGCCACACAGAGCAAGTTGAGGATTTGGACTCCCATGTAAAGCCTCATGATGCTGAGGTCAATGAAGAAGGCCAAGGTTTCCGTGGAAGAAAGGTTGCAAGGAATTCCATCTTAGCAAAGGACACCGTTTCAGTGAAAAAGGCTCAGCAGCATACATAA 660 0.4318 MCWFCFFFPHCNFLFPIQYSEVQVSVPCSSLSTVVTVRCGHCTSLLSVNMMKASFVPFHLLASFSHFEPKEGSSEEDANMTLNSHNATMMTYSDFEEENVIQMTNVVNKPSEKRQRTPSAYNCFIKEEIKRLKAQNPDMTHKEAFSTAAKNWAYFPPSQCKGDQDSCSHTEQVEDLDSHVKPHDAEVNEEGQGFRGRKVARNSILAKDTVSVKKAQQHT. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03331 219 FunFam Axial regulator YABBY 4 103 171 - -
Seca11g03331 219 MobiDBLite consensus disorder prediction 177 200 - -
Seca11g03331 219 SUPERFAMILY HMG-box 105 159 IPR036910 -
Seca11g03331 219 Pfam YABBY protein 10 158 IPR006780 GO:0007275
Seca11g03331 219 MobiDBLite consensus disorder prediction 177 196 - -
Seca11g03331 219 PANTHER PROTEIN YABBY 6-RELATED 22 172 IPR006780 GO:0007275
Seca11g03331 219 Gene3D High mobility group box domain 107 173 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03331 Seca-Chr11 76773476 76776321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03331 13 207 C2C2-YABBY Transcription Factor Family AT1G23420 52.294 9.61e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca11g03331 YABBY 1.7e-50 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03331 K25796 - gmx:100779415 294.664