Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03323 ATGGTTCTCACCGAGATCAGGGGAATCCACTATTTACCACCTGAAAACCAAATCCTAGTTCCACCCAACTTTAACTTGCTGCAGAGTGACATCAACATCCCAAACCTCCACCATTTCTTAAACCAGTTACCAAACTGCTACTTCCACTCCTCAAGCCACCAATTTGTTCCTCCTCCATCTCCATGCTTCACCACCACCACAAGTACTACTAACTCAACCTCTGATGAAGCTGATGAATATCAGCAGAACATAATTGATGAAAGGAAACAAAGGAGAATGATATCTAACAGAGAATCTGCACGCAGATCAAGGATGAGGAAGCAGAAACACTTAGATGAACTCTGGTCACAGGTTGTTAGACTCAGGACTGAGAATCACAACCTTATTGATAAACTGAACCATGTCTCTGAGTCCCATGATAAGGTTCTTCAAGAAAATGCACGCCTCAAAGAAGAAGCTTCTGATCTTCGCCAATTGCTAGCTGATCTTCAAGTTGGAACTTCTTTTACTAACAACATAACAGATTTTGATGAGGATTTTTGCAACACATCATCACAACTTAGATCTGAGTCCTCAAATGAATCACTCACTTCTATGGACATGCTATTAAAATGA 615 0.4081 MVLTEIRGIHYLPPENQILVPPNFNLLQSDINIPNLHHFLNQLPNCYFHSSSHQFVPPPSPCFTTTTSTTNSTSDEADEYQQNIIDERKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHVSESHDKVLQENARLKEEASDLRQLLADLQVGTSFTNNITDFDEDFCNTSSQLRSESSNESLTSMDMLLK. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03323 204 Coils Coil 132 166 - -
Seca11g03323 204 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 91 106 IPR004827 GO:0003700|GO:0006355
Seca11g03323 204 FunFam BZIP transcription factor 86 137 - -
Seca11g03323 204 Gene3D - 86 141 - -
Seca11g03323 204 CDD bZIP_plant_GBF1 89 140 IPR045314 GO:0003700|GO:0006355
Seca11g03323 204 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 86 149 IPR004827 GO:0003700|GO:0006355
Seca11g03323 204 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 8 171 IPR044521 -
Seca11g03323 204 SMART brlzneu 84 148 IPR004827 GO:0003700|GO:0006355
Seca11g03323 204 Pfam bZIP transcription factor 88 146 IPR004827 GO:0003700|GO:0006355
Seca11g03323 204 SUPERFAMILY Leucine zipper domain 88 138 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03323 Seca-Chr11 76394071 76394685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03323 53 170 bZIP Transcription Factor Family AT3G30530 64.167 2.09e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca11g03323 bZIP_1 1.1e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03323 - - gmx:100778078 261.151