LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g03318	ATGACACCAGAGCTTCAATTAATCGCTATTATGTCAGCACCGTCATCGTCTCCGACATCATCAGCCGCCGTGCCACCACCCAGTCCACCGCCACAGCTCTCTTCCCCTGCACCAGGCTGTTCAACTTCACCACTACCATCTCTGTTCCCACCTCTCTTGTCACCTTCAACACCACCACCACTGTTAACTCCTGCTGCTCCTTCACTGCCACCACAGTCTCCGGTGCCGGAAAGTTCACCACCGGTATCACTGCCCCCTGAAAATGCACCCTCTGAAGTGCCCCCTCTTAGGTCTTCTCCACCACCTGAATCAATCCCTCCTCAAAATTCTCCTCCTTCTCCTACACCTCTGAGTAGTGCACCACCACCACCTCCTCCTAGGATAGGTCCTCCTTATTCTCAATCTATCCCATCACCCACATTTAGATCGGCTCCACCACCTCCATCATCACAACATGTATCAAAAAATTCAAGCCCTGGAGGTAGTGGTGGCATTGGTTCTGGTGGTGCAGTAACTATTGGTGTAGTGGCTGGAGTTCTATTGCTTGGCTTCATTGGCATTGCTATCTGGTGCCTGAGCAGGCAAAAGAAAAGGGTGTCTGAGAATGGTAGTTTTGTCTTGCCATCCTCTCATTTCCCATCACCTGAATCAGATTTGTCCCTTTTGAAGACACATTCTTCTGCACCTCTTATACAAAGAGGTTCTGGCAGTGATAATGTGTATACACCATCAGGACTAGGCAACTCAAGGTCATGGTTTGCATATGATGAACTAATCAAGGCCACAAATGATTTTTCAACTGAAAACCTTTTGGGTGAGGGTGGATTTGGTTGTGTATATAAAGGATACCTTCTTGATGGGAGAGAGGTAGCAGTCAAACAGTTGAAAATTGATGGAGGTCAGGGTGAGAGAGAGTTCAAAGCTGAAGTGGAAATTATTAGTCGCATCCATCATCGTCATTTGGTTTCCTTGGTGGGATACTGCATTTCAGATAATAGAAGACTGCTTGTCTATGACTACGTCCCCAACAATACCCTTTATTTTCATCTTCACGGGGAAGATAGGCCAGTGTTAGACTGGGAAAACCGTGTTAAAATTGCTGCTGGTGCTGCTAGAGGAATAGCTTATCTCCATGAAGACTGCATTCCTCGGATTATTCACAGGGATATAAAGTCATCAAATATTCTTTTAGATTACAACTTTGAAGCTAGAGTCTCAGATTTTGGGCTGGCCAAATCAGCCCTTGATACAAATACACATGTAACCACACGTGTAGTGGGGACTTTTGGGTGGGTATTATGTTTATCATTTTCTCCTTTCTTTTCCTTCCTTTTGGGGAGAGGTTCTGGCTTGGTTATACTGAGATATGTTGCCCCTGAGTATGTATCAAGTGGAAAATTGACTGAGAAGTCAGATGTATATTCTTTTGGAGTCATGCTTTTGGAGCTCATTACTGGACGGAAGCCAGTAGATATATCTCAACCAGTTGGAGAAGAGAGTCTAATAGAATGGGCTCGACCTCTGCTAAGTCATGCACTTGATAATGAGGAATTTGAGAGTTTGATAGATCCAAAGCTAGGAAAGAACTATATTGATAGTGAAATAGTTTGCATGATTGAAGTTGCTGCTGCTTGTGTGCAATATTCAGCTACCAAAAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGTTTATCTACTTCTGACTTAACAAATGGAATGAGATTTGGGGAAAGTGAGGCGTTTGATTTGGCACAGCAATCCGCAGAAATAAGATTATTCCGTAGGATGGCATTTGGTTGTCAAGATTATAGCTCGGATATTTTTAGCCAGATTAGTTTGAATACCTAA	1854	0.4407	MTPELQLIAIMSAPSSSPTSSAAVPPPSPPPQLSSPAPGCSTSPLPSLFPPLLSPSTPPPLLTPAAPSLPPQSPVPESSPPVSLPPENAPSEVPPLRSSPPPESIPPQNSPPSPTPLSSAPPPPPPRIGPPYSQSIPSPTFRSAPPPPSSQHVSKNSSPGGSGGIGSGGAVTIGVVAGVLLLGFIGIAIWCLSRQKKRVSENGSFVLPSSHFPSPESDLSLLKTHSSAPLIQRGSGSDNVYTPSGLGNSRSWFAYDELIKATNDFSTENLLGEGGFGCVYKGYLLDGREVAVKQLKIDGGQGEREFKAEVEIISRIHHRHLVSLVGYCISDNRRLLVYDYVPNNTLYFHLHGEDRPVLDWENRVKIAAGAARGIAYLHEDCIPRIIHRDIKSSNILLDYNFEARVSDFGLAKSALDTNTHVTTRVVGTFGWVLCLSFSPFFSFLLGRGSGLVILRYVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKPVDISQPVGEESLIEWARPLLSHALDNEEFESLIDPKLGKNYIDSEIVCMIEVAAACVQYSATKRPRMGQVVRAFDSLSTSDLTNGMRFGESEAFDLAQQSAEIRLFRRMAFGCQDYSSDIFSQISLNT.	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g03318	617	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	385	397	IPR008271	GO:0004672\|GO:0006468
	Seca11g03318	617	SUPERFAMILY	Protein kinase-like (PK-like)	241	561	IPR011009	-
	Seca11g03318	617	MobiDBLite	consensus disorder prediction	20	133	-	-
	Seca11g03318	617	Pfam	Protein kinase domain	266	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g03318	617	MobiDBLite	consensus disorder prediction	147	163	-	-
	Seca11g03318	617	FunFam	Protein kinase superfamily protein	341	413	-	-
	Seca11g03318	617	SMART	serkin_6	265	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g03318	617	MobiDBLite	consensus disorder prediction	10	164	-	-
	Seca11g03318	617	PRINTS	Proline rich extensin signature	44	60	-	-
	Seca11g03318	617	PRINTS	Proline rich extensin signature	73	90	-	-
	Seca11g03318	617	PRINTS	Proline rich extensin signature	91	116	-	-
	Seca11g03318	617	PRINTS	Proline rich extensin signature	18	39	-	-
	Seca11g03318	617	ProSitePatterns	Protein kinases ATP-binding region signature.	271	293	IPR017441	GO:0005524
	Seca11g03318	617	Gene3D	Phosphorylase Kinase; domain 1	233	340	-	-
	Seca11g03318	617	Gene3D	Transferase(Phosphotransferase) domain 1	341	581	-	-
	Seca11g03318	617	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	179	432	IPR047117	-
	Seca11g03318	617	ProSiteProfiles	Protein kinase domain profile.	265	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g03318	617	FunFam	Proline-rich receptor-like protein kinase PERK8	237	340	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g03318	Seca-Chr11	76086268	76091356	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g03318	156	612	Trihelix Transcription Factor Family	AT5G38560	62.393	0.0	575

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Seca11g03318		Pkinase	2e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g03318	-		-	vun:114173712	681.019