Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03317 ATGTATGAAGAAAGTGGTTGCTTTGATCCCAATGCAATGATGGGAACAACAACAGGCCCATCATCAGAAGACTGCTTCTCCCAAATCGTTTCAGAATCAGACCAACCACTTCAGGCACCTGCCACAGAGACCCACAACAGCTTTTCAGAGAATGTGTGTCTTTCTGTGGAAAACTTCTCCTACCCATATTCTTGTGGTGAAGATGCTATTAGTATTACTGCTACTTCTTCTACCCTCACAAATAGAGTTGCTGCTTCTGTTGCCACCGGAATGGAAATCACTGCACATCCCAACCAAATGGGTTTTCACATGGAAAATCCATACAATCATACCAATAACTTCAGTACCAATTTGGTGGAAGAGGTCAATAACAATAACAATTGGGATACTTCAAAACTGCATAAGGTTTACCATAGTCAGCAATTTCCTTATCATCAACAAGATCAGCAATTTCCTTATCCCACAACAAAACCAGATCTTCTTAACCTTCTCCACTTTCCTAGAAGCCCACCTTCCCCATTTGGGAACTCCTCTCTATCTTTTGAAAACCCAAACCACAACACCACCAATCTTTCAAGACCCTCAAGCCATGCCACCTGGATTGGTAACTGCCCTATGGGGGCAGAAAGTACAAACGTTTCCTCTATTACCTATGACCCTTTGTTGCATTTGAACCTCCAAGCACCAACACAAGGTGCTGTACTTCATCCTCTACCCCATGGCTACACCATGGCTTCAAGAAATGATTTTGTCTTTGGTGAAGGGGATGACATAGAAGGTAGTGGGGTTGCTTACCAAGATGGAGATGGGAGAGATTTTGGTAATGGAGTTTTAGAGTTCACCCAAGATGTGGCTTATGTTGGTAAAAAGAGAGGAGGGAAAAGGGTCAAGCAATTTACCAGTACAAGTGAGAAACAAAGGAGAGTGGATTTGAGTAGCAAGTTTGATGCCTTAAAAGAACTCATCCCAAACCCTTCAAGGGTAAGTGATAGAGCATCAGTGGTGGGAGATGCTATTGACTATATCAAAGAGCTTCTAAGGACAGTGAACGAGCTCAAATTATTGGCAGAGAAGAAAAGGCAAGAGAAACAAAGGATCAAGAGGCACAAGGTTGAAGAAGGTGGCTTGCAAGAAGACTACAACTTGAAGCTGGTTGGAATTGGCAACCCAGATGAACAATCCTACAATGAAAGCATTAGAAGCTCTTGGATCCAAAGGAAATCCAAAGACACTGAGGTTGATGTACGCATTATTGACAACGAGGTAATAATAAAGCTTGTTCAAAGGAAGAAGATCAATTGCTTGGTATATGCTTCACAAGTTCTGAATGAACTTAAGCTGGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTTTATGTTCAATAGCAAGATATGTGAAGGTTCCTCAGTTTATGCAAGTGCCATAGCCAACAAACTTATTGAGGTAATGGACAGAAGTTTGGCAGCAGCATGA 1488 0.4227 MYEESGCFDPNAMMGTTTGPSSEDCFSQIVSESDQPLQAPATETHNSFSENVCLSVENFSYPYSCGEDAISITATSSTLTNRVAASVATGMEITAHPNQMGFHMENPYNHTNNFSTNLVEEVNNNNNWDTSKLHKVYHSQQFPYHQQDQQFPYPTTKPDLLNLLHFPRSPPSPFGNSSLSFENPNHNTTNLSRPSSHATWIGNCPMGAESTNVSSITYDPLLHLNLQAPTQGAVLHPLPHGYTMASRNDFVFGEGDDIEGSGVAYQDGDGRDFGNGVLEFTQDVAYVGKKRGGKRVKQFTSTSEKQRRVDLSSKFDALKELIPNPSRVSDRASVVGDAIDYIKELLRTVNELKLLAEKKRQEKQRIKRHKVEEGGLQEDYNLKLVGIGNPDEQSYNESIRSSWIQRKSKDTEVDVRIIDNEVIIKLVQRKKINCLVYASQVLNELKLDLQHVAGGHIGDFCSFMFNSKICEGSSVYASAIANKLIEVMDRSLAAA. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03317 495 Gene3D - 293 372 IPR036638 GO:0046983
Seca11g03317 495 PANTHER TRANSCRIPTION FACTOR BHLH91 1 494 IPR045895 GO:0006355|GO:0048658
Seca11g03317 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 360 IPR036638 GO:0046983
Seca11g03317 495 Pfam Helix-loop-helix DNA-binding domain 302 345 IPR011598 GO:0046983
Seca11g03317 495 Coils Coil 342 372 - -
Seca11g03317 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 345 IPR011598 GO:0046983
Seca11g03317 495 SMART finulus 301 351 IPR011598 GO:0046983
Seca11g03317 495 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03317 Seca-Chr11 76006395 76008527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03317 1 495 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 34.236 5.19e-71 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g03317 HLH 3.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03317 - - vra:106767981 452.21