Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03312 ATGCCTCACTCACTCACTGCCCCTGTTGTGTTTTATGGGGTTCTGGGAAGTGAAGTTGAGAGCTTTGAGCTCTTTCTCCCTTACCCCTTTATTTATTACCTCTCTCAAACTGTCCTTGGAAACCATGGTTTTCTGCATCAACTTTTTTTGGATAGGAGCGTTTCGTTTCTTCAGAATGGTAGCATAGTGTTTTTCTTTGGTAAAATGAAGTACGTGTTGGTGACAGGTGGAGTTGTTAGTGGACTTGGGAAAGGAGTCACTGCCAGCAGCATTGGAGTACTCCTCAAGGCTTGTGGCTTTAGAGTTACTTCTATCAAGATTGATCCCTATCTGAACACTGATGCAGGGACAATGTCTCCTTTTGAGCATGGGGAGGTGTTTGTCTTGGATGATGGCGGTGAGATTGACATAAACCTGAATTTTGACAGCACTAGCTGCACACCAACAATTTCATCTACGAGGTCTTTCATGTCTTCCTTGAGCATAGATGGAAGCGTAGCTAACTTAGATGGAAGTTCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCTGAACTCACAACAACATAAGAGAAAATGTTCTGCCAAAGGTGATGAGGGCAGCTTGAAATGTGGGAGCAGTGCTAGATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATTAAGGTGCCTGCCATCAGCAACAAACTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAGTACGGGCAGAAGCCAATCAAGGGCTCTCCTCACCCTAGAGATGTAGTTCAAATGCAAATTTTAGGAACATTGACTCAGATAGAGCACAGTTTGGTTCCAATTGGTTAG 846 0.4362 MPHSLTAPVVFYGVLGSEVESFELFLPYPFIYYLSQTVLGNHGFLHQLFLDRSVSFLQNGSIVFFFGKMKYVLVTGGVVSGLGKGVTASSIGVLLKACGFRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEIDINLNFDSTSCTPTISSTRSFMSSLSIDGSVANLDGSSFHLIGAPHSSDLNSQQHKRKCSAKGDEGSLKCGSSARCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRDVVQMQILGTLTQIEHSLVPIG. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03312 281 Pfam Plant zinc cluster domain 191 236 IPR018872 -
Seca11g03312 281 Pfam WRKY DNA -binding domain 240 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g03312 281 ProSiteProfiles WRKY domain profile. 233 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g03312 281 SMART WRKY_cls 238 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g03312 281 PANTHER CTP SYNTHASE 69 140 IPR004468 GO:0003883|GO:0006221
Seca11g03312 281 Pfam CTP synthase N-terminus 70 139 IPR017456 GO:0003883|GO:0006221
Seca11g03312 281 Gene3D - 66 143 IPR027417 -
Seca11g03312 281 Gene3D WRKY domain 217 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g03312 281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 141 IPR027417 -
Seca11g03312 281 SUPERFAMILY WRKY DNA-binding domain 236 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03312 Seca-Chr11 75746024 75748081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03312 137 259 WRKY Transcription Factor Family AT2G30590 77.600 7.92e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca11g03312 CTP_synth_N 1.4e-34 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03312 - - gmx:100170681 248.825