Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03300 ATGAGGGGTGGTAGGAAAAGGAAGCTGCATTTAAGCAAGATCTACTCATTCACATGCTGCAAGGCATCTTTCAAAGGAGAACATTCACAGATTGGAGGTAAAGGTTATTCCAGGGTGGTCTTCTGCAATGAGCCAGATAACTTTGAGGCTGGGATTAGGAATTATGCAGATAATTCTGTCAGATCTACAAAATATACTGCTGCTACTTTCCTTCCTAAATCACTGTTTGAGCAGTTTAGGAGGGTGGCCAACTTCTATTTTTTGGTTACTGGTATTTTGGCCTTCACAAAACTTGCTCCATATAAAGCTGTCAGTGCTATCCTCCCCCTGATTATTGTTATTGGGGCAACTATTGTGAAAGAAGGTATTGAAGACTGGCGTAGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGCTAAAGTGCATAAAGTTGATGGCACTTTTGAATATACTGCATGGAAAAATCTGAGGGTGGGGAATATAGTGAAGGTAGAGAAGGATGAGTTCTTCCCAGCAGATCTCCTATTGCTTTCATCCAGTTATGAGGATGCAGTCTGCTATGTTGAGACCACGAACTTGGATGGGGAGACAAATTTAAAGTTAAAACAAGGTTTGGAGGTAACTTCATCCTTAAATGAGGATCTCAACTTCCGAAATTTTAGAGCTATAGTCAAATGTGAAGACCCAAATGCAAGTTTGTACTCATTTGTTGGGAGCATGGAGTTTGAAGAGCAAAAGTATGCCCTTTCTCCTCAACAACTTCTTCTGCGTGACTCAAAACTTCGTAACACAGATTACATTTTTGGAGCTGTCATCTTCACTGGTCATGACACTAAGGTTATTCAAAATTCTACTGATCCACCTTCAAAGAGAAGCAGAATTGAGAAAAAGATGGATAGAATCATCTACTTCTTGTTTTGTATTTTATTTCTTATGGCATTTGTTGGATCTATTTTCTTTGGTGTTTCAACTAAAGATGACTTCGAAAATGGTTTGGTGAAAAGATGGTATTTAAGACCAGATGATTCTACAATCTTCTATGATCCGAAAAGATCAGCTGCTGCTGCTATGTTTCATTGTTTGACAGCCTTAATGTTATATGGCTTCTTTATTCCCATCTCTTTGTATGTGTCAATAGAAATTGTCAAAGTCCTTCAAAGCATTTTCATCAATCAAGATATCTATATGTACTACAAGGAAGCAGACAAACCAGCCCATGCTCGCACTTCAAACTTGAATGAGGAGCTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACTTGCAACTCAATGGAGTTTATCAAATGTTCTATCGCTGGGGTAGCTTATGGCCGTGGTGTTACAGAGGTTGAGAAGACCATGCATAGAAGAAAAGGCTCATCATTTGTTCATGAGCATGATATATCAGAAGAAGATGACATCAGGGATTCTCTTGATAAAAAAGCACTAATTAAAGGTTTTAACTTCACTGATGAAAGAATAACAAATGGAAATTGGGTTAATGAGCCTCATGCAGATGTTATCCAGAAGTTTTTTCGCCTATTAGCAGTATGTCATACAGCCATACCAGAAGTGGATAATGACACAGGAAATGTCTCATATGAGGCTGAATCCCCAGATGAAGCAGCATTTGTGATTGCCGCGAGAGAACTTGGTTTTGAATTCTGCAAAAGGGCTCAGACTAGTTTATCAACATGTGAGTTGGATCCAGTATCTGGCAAGAAAGTTGAAAGGATGTACAAGCTTCTCAATGTACTAGAATTCAATAGCTCAAGGAAGCGAATGTCAGTGATAGTGGAAGATGAAGAAGGGAAAATTTTGCTACTCTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGAATGGGAGGGAGTTTGAAGAGAAAACCATGGAGCATGTGCATGAGTATGCTGATGCAGGTCTTAGAACCCTTATACTGGCCTATCGTGAGCTTGATGCAGAAGAATACAAGGAGTTTGATAATAGATTCTCTAAGGCCAAGAATTTAGTTAGTGCAAATCAGGAAGCACTGATTGAGGAGGTATCAGATAGTATTGAGAAAAATCTAATCCTTCTAGGTGCCACTGCTGTAGAAGACAAGCTCCAAAGTGGGGTTCCTGATTGCATTGACAAGCTTGCACAAGCAGGAATTAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACTGCAATCAATGTTGGATTTGCTTGTAGTTTGCTCAGACAAGGAATGAAGCAAATTATAATTCATTTGGATAGTCCAGAAATTCAAGCACTAGAGAAGGATGGGGACAAGATAGCTATTACCAAGGCATCAAGGCAAAGTGTCCTCCTTCAGATATCTGAAGGTGCGGCACAGCTTGCTGCATACAGAGGGAGCTCTAAGCAGGCATTTGCTCTGATTGTTGATGGAAAATCACTTGTTTATGCACTAGAAGATAATATGAAGAACATGTTTCTGGAGCTTGCAATTCGTTGTGCATCTGTTATTTGCTGTCGCTCATCACCAAAGCAGAAGGCACTGGTAACTAGATTGGTCAAGTCTGGAACTAGGAAAACAACATTAGCTATTGGAGATGGAGCTAATGATGTGGGAATGCTTCAAGAAGCAGATATAGGTGTTGGGATAAGTGGTGTGGAAGGAATGCAGGCTGTTATGTCTAGTGATATTGCAATTGCACAGTTCCGATATTTGGAACGATTACTTTTGGTGCATGGACATTGGTGTTACCGGAGGATCTCATCTATGATATGCTATTTTTTCTACAAGAATGTCACATTTGGTTTTACTCTATTCTTATATGAGGTGTATGCATCATTCTCCGGAGTACCTGCATACAATGACTGGTTTTTGTCTCTCTATAATGTCTTCTTTTCGTCACTTCCCGTGATTGCTCTTGGGGTATTTGACCAGGATGTATCTGCTCGGTACTGCTTGAAGTTTCCTTTGTTATATCAAGAAGGAGTACAGAATGTCCTTTTCAGCTGGCGCCGAATTCTCAGCTGGATGCTTAATGGATTTATTAGTGCCTTAATAATTTTCTTCTTCTGCACAAAAGCAATAGAGCTCCAAGCCTTTGATGAGGAAGGTAGAACAGCTGGGAGGGATATACTGGGAGCAACCATCTATACTTGTATAGTTTGGGTTGTAAACTTGCAGATGGCACTAGCTATAAGTTACTTCACCATGATCCAACATTTTTTCATCTGGGGTTCCATTGCTTTCTGGTACATTTTTCTCCTGATATATGGAGCAATGCCTCCAAATCTATCTGAAAATGCTTACAAAGTCTTCATTGAAACTCTTGCTCCTTCCCCCTCCTATTGGATCGTCACATTCTTTGTGGTGATCACAACCCTTATACCATACTTCTCATACTCAGCAATAAAGATGAGGTTCTTTCCCATGTATCATGAAGTGGTACAGTGGATAAGGTATGAGGGGAAGACTAAGGATCCTGAGTTCTGTGAAATGGTGCAGCAGAGGTCATTGCAGCTTATGACTGTTGGTTCATCAGCACGCTTAGCAGCCAAGGCAAACCAATTTAGATAA 3576 0.401 MRGGRKRKLHLSKIYSFTCCKASFKGEHSQIGGKGYSRVVFCNEPDNFEAGIRNYADNSVRSTKYTAATFLPKSLFEQFRRVANFYFLVTGILAFTKLAPYKAVSAILPLIIVIGATIVKEGIEDWRRKKQDIEVNNRRAKVHKVDGTFEYTAWKNLRVGNIVKVEKDEFFPADLLLLSSSYEDAVCYVETTNLDGETNLKLKQGLEVTSSLNEDLNFRNFRAIVKCEDPNASLYSFVGSMEFEEQKYALSPQQLLLRDSKLRNTDYIFGAVIFTGHDTKVIQNSTDPPSKRSRIEKKMDRIIYFLFCILFLMAFVGSIFFGVSTKDDFENGLVKRWYLRPDDSTIFYDPKRSAAAAMFHCLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIYMYYKEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEKTMHRRKGSSFVHEHDISEEDDIRDSLDKKALIKGFNFTDERITNGNWVNEPHADVIQKFFRLLAVCHTAIPEVDNDTGNVSYEAESPDEAAFVIAARELGFEFCKRAQTSLSTCELDPVSGKKVERMYKLLNVLEFNSSRKRMSVIVEDEEGKILLLCKGADSVMFERLAKNGREFEEKTMEHVHEYADAGLRTLILAYRELDAEEYKEFDNRFSKAKNLVSANQEALIEEVSDSIEKNLILLGATAVEDKLQSGVPDCIDKLAQAGIKIWVLTGDKMETAINVGFACSLLRQGMKQIIIHLDSPEIQALEKDGDKIAITKASRQSVLLQISEGAAQLAAYRGSSKQAFALIVDGKSLVYALEDNMKNMFLELAIRCASVICCRSSPKQKALVTRLVKSGTRKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNVTFGFTLFLYEVYASFSGVPAYNDWFLSLYNVFFSSLPVIALGVFDQDVSARYCLKFPLLYQEGVQNVLFSWRRILSWMLNGFISALIIFFFCTKAIELQAFDEEGRTAGRDILGATIYTCIVWVVNLQMALAISYFTMIQHFFIWGSIAFWYIFLLIYGAMPPNLSENAYKVFIETLAPSPSYWIVTFFVVITTLIPYFSYSAIKMRFFPMYHEVVQWIRYEGKTKDPEFCEMVQQRSLQLMTVGSSARLAAKANQFR. 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03300 1191 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 39 1154 - -
Seca11g03300 1191 Gene3D - 547 700 IPR023299 GO:0000166
Seca11g03300 1191 NCBIfam HAD-IC family P-type ATPase 836 948 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g03300 1191 NCBIfam phospholipid-translocating P-type ATPase 55 1150 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca11g03300 1191 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 702 IPR023299 GO:0000166
Seca11g03300 1191 SUPERFAMILY HAD-like 419 920 IPR036412 -
Seca11g03300 1191 CDD P-type_ATPase_APLT_Dnf-like 57 1025 - -
Seca11g03300 1191 FunFam Phospholipid-transporting ATPase 700 905 - -
Seca11g03300 1191 Gene3D - 117 286 - -
Seca11g03300 1191 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Seca11g03300 1191 SFLD Haloacid Dehalogenase 406 916 - -
Seca11g03300 1191 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Seca11g03300 1191 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
Seca11g03300 1191 FunFam Phospholipid-transporting ATPase 116 286 - -
Seca11g03300 1191 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 1143 IPR023298 -
Seca11g03300 1191 Pfam Cation transport ATPase (P-type) 531 626 - -
Seca11g03300 1191 Gene3D - 701 905 IPR023214 -
Seca11g03300 1191 FunFam Phospholipid-transporting ATPase 542 700 - -
Seca11g03300 1191 SUPERFAMILY Calcium ATPase, transduction domain A 140 283 IPR008250 -
Seca11g03300 1191 Pfam Phospholipid-translocating P-type ATPase C-terminal 893 1143 IPR032630 -
Seca11g03300 1191 SFLD p-type atpase 406 916 IPR044492 -
Seca11g03300 1191 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03300 Seca-Chr11 75457521 75467101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03300 3 1191 Primary Pumps ATPases AT1G68710 73.508 0.0 1890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03300 K01530 - gmx:100781421 2119.35