Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03285 ATGGATTCACTTCTCTCTCTTCAAACAGCTTCAAGTACCATCTCTCACCCACCCCCACCACCACCCGCGGGCTTTTCCACCCCTGACGCCAGCAGCTCCACTGCTGCCTCAGCCACAGCCACCAACATTGCCCTCGGAGTGCCTCTTCTCTCTTTCCCGAACTTGTTGGTTCCCAAGCCAGAACCTTTCGATGAATTCTTCGCGACCCAGGACCCCCAACAACAACCCCATGGTCCAGCTGATGGGTCCGAAGACGATCAAGAACCCGATTTGTATACCCAGTTCTATCGGGTCTCCAAGCTCTTCAGTGATGCCCTTGGCGATACCTTTTTCTTCGGAGCCCAACACATTGGTGCTCCTCAGAACCCGATTCCAAACACTCTGAACCTCAATTTTCCGGACCCAATCCCGGACCCGGACCCGAAAGCACCGTCCGAAGACATTGACCCGATTGTCGAGGACCAGAATTTGCAGTCCGAAGACGGAAATGCGGTTATTTCGGACCAGAGTTCGCGAGCGATCGTTCCTGTGCCGCCTCCGGAGCAGTCGGCGGCGGTGGTGGTGAGACGGAGGCAGAGCCGGGTGAAGGAGCTGGTTAGGGTAACCGATCTCGAAGTGAAGGATCAGATGCAACACCGTGAGCTTGTGAGGAGGACGAGGATGGTCTACGATTCCCTGAAAGTGTGGGCGACCATAGAGGAAGAAAAGAGAGCGGCCGCTGAACTCCTCGCCGGGCCGGACGACGCCGACAATCCCTCCCGGAGTCGGCGCATCCGAGGGGACCTGAGGGCTGCAGCAGTGATGAGGCGGTGTGGTTTGTGGATGAACCGTGATAAGCGGATTGTTGGAGCAATTCCTGGTGTGTTTGTTGGTGATGTGTTTCTTTTCAGGATGGAACTGTGTGTGCTTGGTTTGCACGGTCAGATACAGGCTGGCATTGATTATCTTCCTTCAAGCATGAGCGCCAATGGAGAGCCAATTGCTACCAGTGTCATTGTTTCTGGTGGGTATGAGGATGACTTGGATGATGGTGAGGTTATCATCTACACTGGACATGGTGGGCAGGAGAAGAATTCATCAAGGCAAATTTGTGACCAGAAGTTGGAGGGAGGAAACCTTGCTTTGGAAAGGAGCATGCATTATGGGATTGAGGTAAGGGTTATTCGAGGAATGAAGTATGAGGGGAGTGCTTCAAGTTCAGGTAAGATTTATGTTTATGATGGAGTGTATAAGATTGTTGAATGCTGGTTTGATATGGGGAGGTCTGGTTTTGGTGTTTATAAGTATAAGCTTTGTAGGATTGAGGGACAACCTAAGATGGGTAGTGCTATTCTGAAAGAAGCTAGGGAGATTAGAAGAAGTGGATTGGATTTCAAACCTGTGCATTGTCTTTCTGTTGATATGTCAAACAAGAGGGAGAATGTTGCTGTTAGGCTTTTTAATGACATAGATGACAGTCAGGTTCCTCTTTGTTATGAATATCTTCCCAGGACTACTTTTCCGCCCTTTGTGTTTCATCAGAGTGGGAAGGCTACTGGTTGTGACTGTAAAGATGGTTGTGCTGATGGCTGCTTTTGTGCTATGAAAAATGGGGGTGAGTTTCCTTATAACCTACAAGGGCTTCTTGTGAGAGGAAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGCAGCTGTCCTCCTAATTGTCGGAATCGTGTTACACAAAAGGGGCTGAAAAATAGGTTGGAAGTGTTTAGGTCTAGGCAGACGGGTTGGGGAGTTAGGTCCTTGGATGTCATCCATGCTGGTGCTTTTATCTGTGAGTATACAGGGGTTGTTTTGACTAGGGAACAAGCGCAAATTTTGACAATGAATGGTGACTCATCAATATATCCCAATCGATTTTCAGAAAAATGGGCAGAATGGGGGGATTTATCTCAGATATACGCTGATTATGTGCGTCCATCATATCCATCAGTCCCTCCTTTAGATTTTTCTTTGGATGTGTCATCAATGAGGAATGTTGCTTGCTATATAAGCCATAGTTCAACTCCAAATGTGTTAGTTCAGTTTGTTCTGTACGATCACAACAACTTGATGTTCCCTCATGTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACAGGCAAGCTCTCTATCTGCAACTGA 2190 0.4822 MDSLLSLQTASSTISHPPPPPPAGFSTPDASSSTAASATATNIALGVPLLSFPNLLVPKPEPFDEFFATQDPQQQPHGPADGSEDDQEPDLYTQFYRVSKLFSDALGDTFFFGAQHIGAPQNPIPNTLNLNFPDPIPDPDPKAPSEDIDPIVEDQNLQSEDGNAVISDQSSRAIVPVPPPEQSAAVVVRRRQSRVKELVRVTDLEVKDQMQHRELVRRTRMVYDSLKVWATIEEEKRAAAELLAGPDDADNPSRSRRIRGDLRAAAVMRRCGLWMNRDKRIVGAIPGVFVGDVFLFRMELCVLGLHGQIQAGIDYLPSSMSANGEPIATSVIVSGGYEDDLDDGEVIIYTGHGGQEKNSSRQICDQKLEGGNLALERSMHYGIEVRVIRGMKYEGSASSSGKIYVYDGVYKIVECWFDMGRSGFGVYKYKLCRIEGQPKMGSAILKEAREIRRSGLDFKPVHCLSVDMSNKRENVAVRLFNDIDDSQVPLCYEYLPRTTFPPFVFHQSGKATGCDCKDGCADGCFCAMKNGGEFPYNLQGLLVRGKPLIFECGPFCSCPPNCRNRVTQKGLKNRLEVFRSRQTGWGVRSLDVIHAGAFICEYTGVVLTREQAQILTMNGDSSIYPNRFSEKWAEWGDLSQIYADYVRPSYPSVPPLDFSLDVSSMRNVACYISHSSTPNVLVQFVLYDHNNLMFPHVMLFAMENIPPMRELSLDYGVADEWTGKLSICN. 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03285 729 MobiDBLite consensus disorder prediction 1 37 - -
Seca11g03285 729 Gene3D SET domain 442 729 IPR046341 -
Seca11g03285 729 Pfam SAD/SRA domain 282 437 IPR003105 -
Seca11g03285 729 Pfam SET domain 584 716 IPR001214 GO:0005515
Seca11g03285 729 SUPERFAMILY SET domain 458 728 IPR046341 -
Seca11g03285 729 ProSiteProfiles Pre-SET domain profile. 512 570 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca11g03285 729 SMART set_7 573 722 IPR001214 GO:0005515
Seca11g03285 729 SMART preset_2 465 557 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca11g03285 729 MobiDBLite consensus disorder prediction 125 147 - -
Seca11g03285 729 SUPERFAMILY PUA domain-like 264 446 IPR015947 -
Seca11g03285 729 Pfam Pre-SET motif 469 565 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca11g03285 729 ProSiteProfiles SET domain profile. 573 716 IPR001214 GO:0005515
Seca11g03285 729 ProSiteProfiles YDG domain profile. 283 433 IPR003105 -
Seca11g03285 729 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 265 450 - -
Seca11g03285 729 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 138 717 - -
Seca11g03285 729 SMART G9a_1 278 437 IPR003105 -
Seca11g03285 729 MobiDBLite consensus disorder prediction 61 88 - -
Seca11g03285 729 Gene3D - 280 441 IPR036987 -
Seca11g03285 729 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 115 729 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03285 Seca-Chr11 74542552 74551834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03285 148 718 Su(var)3-9 homologs AT5G04940 37.329 1.62e-106 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca11g03285 SAD_SRA 1.6e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03285 K11420 - gmx:100785015 935.25