Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03279 ATGGCTCGCTCTGTGCCTTTGGTATGCACTATTTTTGTCTTCCTTCTGCTTCTGGTGGCCACTGAGATGGGGCCAACCATGGTGGCTGAAGCAAGGACTTGTGAGTCTCAAAGTCACCGTTTCAAAGGACCATGTGTGAGTGACACCAATTGTGGCTCTGTTTGTCGAACAGAACGCTTCACTGGAGGACATTGTCGTGGCTTCCGTCGCAGATGCTTCTGCACTAAACATTGTTAA 237 0.4937 MARSVPLVCTIFVFLLLLVATEMGPTMVAEARTCESQSHRFKGPCVSDTNCGSVCRTERFTGGHCRGFRRRCFCTKHC. 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03279 78 Pfam Gamma-thionin family 32 78 - -
Seca11g03279 78 ProSitePatterns Gamma-thionins family signature. 32 55 IPR008176 GO:0006952
Seca11g03279 78 Gene3D - 32 78 IPR036574 -
Seca11g03279 78 PRINTS Purothionin signature 63 77 IPR008176 GO:0006952
Seca11g03279 78 PRINTS Purothionin signature 33 48 IPR008176 GO:0006952
Seca11g03279 78 CDD Knot1 43 75 IPR003614 GO:0006952
Seca11g03279 78 PANTHER DEFENSIN-LIKE PROTEIN 1 8 78 - -
Seca11g03279 78 SMART gth_4 33 78 IPR003614 GO:0006952
Seca11g03279 78 SUPERFAMILY Scorpion toxin-like 32 78 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03279 Seca-Chr11 73833576 73834569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03279 1 78 Plant Defensins Gene Families AT2G02100 61.538 1.01e-30 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03279 - - gmx:547843 152.91