Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03249 ATGGCGACGCTGTTGAGAAAACTCTGCGAATTGAAGCGATCAACCTCCAATTCAAACTCCAACTCCTCCTCTTCCTCATCATCCCAACGCGCAAATTCACCTCTGGGTTCATTCGACCCACTCCCCCCTGACATATTAATGCAAATCCTGAGACTCTTGGGCCCAAAACAAGCCGCTAAACTCAGCCTCGTTTGCAAGTCTTGGCGATCCCTCGTCTCCGATAACGCCCTCTGGGTCCACTTCCTTCAGACTCACCAACCCGAACCCTGGGACTCAATCCTCTTCGCTGAAACCACCTTGACCTCTGGCTACCCTCTTCCGGCCTTGGTTCCTCAGGTGCCACGCGTGTCGTTCAACCATGTTTACGCCCAACGCGCGCGATTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGTTATTGCAAATTTGGTTGGAGCAAACACGCGGGTCCAATGGGGCGGTTCGCGACCTTTTTGGTAAGTTTTCCTTTTGGTTATATGTCTATATGGGAATTTAATATGCAGGAGTTTGATAACGTGGAAACGCCAATATACACCAGACTTCGACATTTTTTTGGGACAATCTATAACAGGATGGAGGTGAAACCAAGTTCTCAACCAGTTGTTGTTTCTATACCAATATGTCACTATGATGATACTGAATCAGCCAAAGCATCAAGACAACAGCTTAAAGATGCAATCTATGCTGCCCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCGACTTTAGCTCTCTATGCTGCAAAACAAACTTCTGGAATAGCTGTTAATATAGGTTTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTGGGATTGGGAGCACTAAAACTTACAGGATTTCTTCGAGAGCAAATGCAACAAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACGCTGAAAGAGGTATTGCTCTGGTTCTTTCTGTTCTGA 1005 0.4557 MATLLRKLCELKRSTSNSNSNSSSSSSSQRANSPLGSFDPLPPDILMQILRLLGPKQAAKLSLVCKSWRSLVSDNALWVHFLQTHQPEPWDSILFAETTLTSGYPLPALVPQVPRVSFNHVYAQRARFPGSIIIDGGSGYCKFGWSKHAGPMGRFATFLVSFPFGYMSIWEFNMQEFDNVETPIYTRLRHFFGTIYNRMEVKPSSQPVVVSIPICHYDDTESAKASRQQLKDAIYAALFDMNVPAVCALNQATLALYAAKQTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREQMQQNNISFESLYTVRTLKEVLLWFFLF. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03249 334 SMART fbox_2 41 81 IPR001810 GO:0005515
Seca11g03249 334 Gene3D - 24 104 - -
Seca11g03249 334 SUPERFAMILY F-box domain 26 94 IPR036047 GO:0005515
Seca11g03249 334 MobiDBLite consensus disorder prediction 13 34 - -
Seca11g03249 334 Pfam F-box-like 41 80 IPR001810 GO:0005515
Seca11g03249 334 SUPERFAMILY Actin-like ATPase domain 131 267 IPR043129 -
Seca11g03249 334 Gene3D - 132 251 - -
Seca11g03249 334 PANTHER ACTIN 189 328 IPR004000 -
Seca11g03249 334 Pfam Actin 195 320 IPR004000 -
Seca11g03249 334 SUPERFAMILY Actin-like ATPase domain 262 330 IPR043129 -
Seca11g03249 334 ProSiteProfiles F-box domain profile. 35 81 IPR001810 GO:0005515
Seca11g03249 334 Gene3D Actin; Chain A, domain 4 295 327 - -
Seca11g03249 334 CDD F-box_AtARP8-like 37 81 - -
Seca11g03249 334 Gene3D - 252 294 - -
Seca11g03249 334 CDD NBD_sugar-kinase_HSP70_actin 132 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03249 Seca-Chr11 71552639 71557733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03249 194 333 Cytoskeleton Gene Families AT3G12110 28.472 8.73e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03249 K16616 - gmx:100804254 477.633