Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03234 ATGCGAGAGAATGATAATAGGAATAAGGAGGGAGATGGTGAAGTTAACTTGAATTCCAGTAATGAAGACAATGTATGTTCTGATGATGTTGTTCCTGATGTGTTGAAAAGGATTTCTGAGTTAAGTGATGACGATATTAGATCGCTTGAATTTGATTCTGAAGAGGAAGCATATGAATTCTATAGTGAATATGCTAAATATAAAGGATTTATTGTTAGGAAAGATGACGTTATTCGTGATCGGAATAAGCGTATTAAAATGAGACAATTGGTATGTAATAGGCAAGGGGAGAGGAGTGAGAAGCATTTAAATAGAACTGATAGAATTAGAGAAGCTAAGGCCATTACTCGTACCAAATGCCTTGCGAGGATTCGATTGTACCTGGATAATAAAAGTAATAAGTGGAGGGTTGGAATGTTTGAGTCAGAACATAATCATGAGCTAACTCCTTCTAATATGGTACATTTGATGCCTGCTTATCATGGCTTGAGTGTTGCTGATAAGGCACAAGTAAATAGTCTTCACTTGTACGGTGTAAGGACATGTCATATAATGGGGTTAATAATGGGTCAGAAGGGTGTTCATTCAGACCTGGGATTTTGTAAGAAGGACTTATACAATCACATTGGCAAGGAGAATAGGGCCAAAATAGAGGATGGAGATGCTTTTGCTGCTTTGTGCTATCTTCAAGCTAATTCATTCATTAAGAGATATGTTCAGAGTAAAAACAGTCTTGTAGATTTCCTTCATAATTTTGAGAGAGCTCTGAATGAATATAGGCATAATGAGTTAGCTTCTGACTATAAGTCTACATACACCCAACCTTTTTTGACCACTGCCTTGGAAAAATATGAAGTTCATGCTTGTAAAGTCTATACCAGGAATAAATTTTTTGATGTTAGAAAGGAGATTGAGAAAGTTGCTGCCTTGAATCTGGTTGATAGGACTGAGTTAGGTAATATTGTCACAATGAAGATGAATAAGTTTGGAAGTCCGAATTCCCTGTATGTTGTGATTTATGATAGGTCTCTTGGTAAGTTGATTTGTGACTGTCGCCTATTTGAATCATGTGGATTACCTTGCTCACATATTTTTTGTGCTATGAAACACGAGCAAATAGAATCAATCCCCTCTTCATTGATTTGA 1146 0.363 MRENDNRNKEGDGEVNLNSSNEDNVCSDDVVPDVLKRISELSDDDIRSLEFDSEEEAYEFYSEYAKYKGFIVRKDDVIRDRNKRIKMRQLVCNRQGERSEKHLNRTDRIREAKAITRTKCLARIRLYLDNKSNKWRVGMFESEHNHELTPSNMVHLMPAYHGLSVADKAQVNSLHLYGVRTCHIMGLIMGQKGVHSDLGFCKKDLYNHIGKENRAKIEDGDAFAALCYLQANSFIKRYVQSKNSLVDFLHNFERALNEYRHNELASDYKSTYTQPFLTTALEKYEVHACKVYTRNKFFDVRKEIEKVAALNLVDRTELGNIVTMKMNKFGSPNSLYVVIYDRSLGKLICDCRLFESCGLPCSHIFCAMKHEQIESIPSSLI. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03234 381 SMART 26again6 347 374 IPR006564 GO:0008270
Seca11g03234 381 PANTHER OS01G0519700 PROTEIN 242 379 - -
Seca11g03234 381 ProSiteProfiles Zinc finger SWIM-type profile. 336 372 IPR007527 GO:0008270
Seca11g03234 381 MobiDBLite consensus disorder prediction 1 28 - -
Seca11g03234 381 Pfam FAR1 DNA-binding domain 59 149 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03234 Seca-Chr11 70737901 70739675 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g03234 FAR1 2.5e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03234 - - ccaj:109792835 232.261