Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03233 ATGACCAAAGTGCTAGATGGATCGCTAATAGTACCACCTGGTTACAAAATTTATCCTACTGATGGAGAGTTGATTGAGCATTACTTGAAGGCTAAAATTAATGGTGATTTCATAATTCCCGGTCGAATTCATGATGTTGATGTCTACAAACATCCTCCCAATACACTAGGTAATATGTATAAGCGCAAAGGAGAGCAACATATGTATTTTTTCACTCGAAGAAACCGAAAATACCCAAATGGGAGTCGTCCAGATCGTGCTGTTGGAGGCTCAGGTTTCTGGAAGGCAACTGGGAAAGATTGTGAAATAAGGCACAATGGTTCAATCATTGGAATGAAGAAGTCTTTAGTCTTTTACGAAGGACAGCGACCTAAAAATGTGGTGAAAACCAATTGGCATATGCAAGAATTCACTCTTAAAGAAGAAACATATAATCATAAAAAAAGGAGTCTTCAGAGTTCAGCTGCAACTACTCACAAGGTATATAATATAGTATATATATTATTCACAATAACAATGGATAATTGA 528 0.3655 MTKVLDGSLIVPPGYKIYPTDGELIEHYLKAKINGDFIIPGRIHDVDVYKHPPNTLGNMYKRKGEQHMYFFTRRNRKYPNGSRPDRAVGGSGFWKATGKDCEIRHNGSIIGMKKSLVFYEGQRPKNVVKTNWHMQEFTLKEETYNHKKRSLQSSAATTHKVYNIVYILFTITMDN. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03233 175 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Seca11g03233 175 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Seca11g03233 175 SUPERFAMILY NAC domain 7 146 IPR036093 GO:0003677|GO:0006355
Seca11g03233 175 PANTHER NAC TRANSCRIPTION FACTOR 56 11 149 - -
Seca11g03233 175 ProSiteProfiles NAC domain profile. 11 164 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03233 Seca-Chr11 70733775 70734571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03233 11 140 NAC Transcription Factor Family AT5G39610 51.145 3.84e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g03233 NAM 5.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03233 - - cam:101501775 172.555