Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03228 ATGGATGAGGTTAGACCTGGCAGTGAAGCGGAGCAGCCTCAGTCCAGAGACTCGGTTTCTGCCTCCGCAGCGCCGTCGTCATCGTCGTCGGGGGGATGGCGTCCCCGGGGGTTTGCGTTTACTCCTTGTGTGCCACAGGGTGAAGAAGTTGCTACTGTTGGAAAGCCCCAATCTTTGCGTGCGGTTGTGAGGAAACCCTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATACCAAATATGCAATCCACAGTTTAAATATTCTGAAGATCTAAACCCAAAGAGATTTTTGACCAGCCCATCTGTTGGAGTGCTTAATGATGGCTATGATAATGTAAACTCAGATCTTATTCTGACAGTGAATTTTGTCTTGATCCATGTAGAGAAAAATAGAAGATATATTGTCAAAGATGTCCTTGGCCATGGGACATTTGGACAAGTGGCCAAATGCTGGGACTCAGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAGCCTGCGTACTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAATATGATCCGGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATATGCTTTGAACTGCTGGACACAAACTTGTATGAGCTTATCAAGATGAATCATTTTAGGGGATTATCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCACTGTGAAGCCAGCAGAAATCAAGATTATTGACTTTGGATCAGCATGCATGGAGAACCGCACTGTTTACTCCTATATTCAGAGTCGATACTATAGATCTCCTGAGGTTCTTCTTGGATATCAGTATCCTAACCAATCAAATCAATACACAACAGCTATTGATATGTGGTCCTTTGGATGCATAGTGGCGGAATTGTTTCTTGGATTGCCATTATTCCCTGGAGCTTCAGAATTTGATCTTTTGAGGCGGATGATTGAAATACTTGGAGGACAACCACCTGATTATCTACTAAGGGATGCCAAAAGCACAAGTAAATTTTTTAAGTGTATTGGGAGTCTCCAGAACATAGAGAGTAATGAGAATTCCAAAATTGGAAGTGTGTATCAAGCATTGACGGAGGAAGAATATGAAGCTAGAGAAATGAAGAAGCCAACAATTGGAAAAGAATATTTCAATCATATGAATCTTGAAGCAATTGTTACAAACTATCCGTACAGGAAAAACCTGCCTAAGGAAGATATTGTGAAAGAAAGTCAAATACGATTGGCTCTTATTGACTTTTTGAAAGGGCTTGTTGAATTCGATCCTGCAAAACGCTGGTCACCCTTCCAGGTAGTTGGCTTTGTATTGTCTGATTGA 1455 0.4041 MDEVRPGSEAEQPQSRDSVSASAAPSSSSSGGWRPRGFAFTPCVPQGEEVATVGKPQSLRAVVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSVGVLNDGYDNVNSDLILTVNFVLIHVEKNRRYIVKDVLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYPNQSNQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEILGGQPPDYLLRDAKSTSKFFKCIGSLQNIESNENSKIGSVYQALTEEEYEAREMKKPTIGKEYFNHMNLEAIVTNYPYRKNLPKEDIVKESQIRLALIDFLKGLVEFDPAKRWSPFQVVGFVLSD. 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03228 484 CDD PKc_YAK1 134 476 - -
Seca11g03228 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Seca11g03228 484 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Seca11g03228 484 PANTHER DUAL SPECIFICITY PROTEIN KINASE 63 477 - -
Seca11g03228 484 Pfam Protein kinase domain 135 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03228 484 ProSiteProfiles Protein kinase domain profile. 134 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03228 484 MobiDBLite consensus disorder prediction 1 34 - -
Seca11g03228 484 MobiDBLite consensus disorder prediction 11 34 - -
Seca11g03228 484 Gene3D Transferase(Phosphotransferase) domain 1 215 479 - -
Seca11g03228 484 Gene3D Phosphorylase Kinase; domain 1 99 214 - -
Seca11g03228 484 SMART serkin_6 134 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03228 484 SUPERFAMILY Protein kinase-like (PK-like) 127 479 IPR011009 -
Seca11g03228 484 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 97 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03228 Seca-Chr11 70520167 70533165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03228 140 361 MAP Kinase Gene Family AT3G45640 37.500 7.19e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Seca11g03228 Pkinase 3.3e-49 CL0016