LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g03228	ATGGATGAGGTTAGACCTGGCAGTGAAGCGGAGCAGCCTCAGTCCAGAGACTCGGTTTCTGCCTCCGCAGCGCCGTCGTCATCGTCGTCGGGGGGATGGCGTCCCCGGGGGTTTGCGTTTACTCCTTGTGTGCCACAGGGTGAAGAAGTTGCTACTGTTGGAAAGCCCCAATCTTTGCGTGCGGTTGTGAGGAAACCCTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATACCAAATATGCAATCCACAGTTTAAATATTCTGAAGATCTAAACCCAAAGAGATTTTTGACCAGCCCATCTGTTGGAGTGCTTAATGATGGCTATGATAATGTAAACTCAGATCTTATTCTGACAGTGAATTTTGTCTTGATCCATGTAGAGAAAAATAGAAGATATATTGTCAAAGATGTCCTTGGCCATGGGACATTTGGACAAGTGGCCAAATGCTGGGACTCAGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAGCCTGCGTACTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAATATGATCCGGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATATGCTTTGAACTGCTGGACACAAACTTGTATGAGCTTATCAAGATGAATCATTTTAGGGGATTATCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCACTGTGAAGCCAGCAGAAATCAAGATTATTGACTTTGGATCAGCATGCATGGAGAACCGCACTGTTTACTCCTATATTCAGAGTCGATACTATAGATCTCCTGAGGTTCTTCTTGGATATCAGTATCCTAACCAATCAAATCAATACACAACAGCTATTGATATGTGGTCCTTTGGATGCATAGTGGCGGAATTGTTTCTTGGATTGCCATTATTCCCTGGAGCTTCAGAATTTGATCTTTTGAGGCGGATGATTGAAATACTTGGAGGACAACCACCTGATTATCTACTAAGGGATGCCAAAAGCACAAGTAAATTTTTTAAGTGTATTGGGAGTCTCCAGAACATAGAGAGTAATGAGAATTCCAAAATTGGAAGTGTGTATCAAGCATTGACGGAGGAAGAATATGAAGCTAGAGAAATGAAGAAGCCAACAATTGGAAAAGAATATTTCAATCATATGAATCTTGAAGCAATTGTTACAAACTATCCGTACAGGAAAAACCTGCCTAAGGAAGATATTGTGAAAGAAAGTCAAATACGATTGGCTCTTATTGACTTTTTGAAAGGGCTTGTTGAATTCGATCCTGCAAAACGCTGGTCACCCTTCCAGGTAGTTGGCTTTGTATTGTCTGATTGA	1455	0.4041	MDEVRPGSEAEQPQSRDSVSASAAPSSSSSGGWRPRGFAFTPCVPQGEEVATVGKPQSLRAVVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSVGVLNDGYDNVNSDLILTVNFVLIHVEKNRRYIVKDVLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYPNQSNQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEILGGQPPDYLLRDAKSTSKFFKCIGSLQNIESNENSKIGSVYQALTEEEYEAREMKKPTIGKEYFNHMNLEAIVTNYPYRKNLPKEDIVKESQIRLALIDFLKGLVEFDPAKRWSPFQVVGFVLSD.	485

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca11g03228	484	CDD	PKc_YAK1	134	476	-	-
Seca11g03228	484	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	257	269	IPR008271	GO:0004672\|GO:0006468
Seca11g03228	484	ProSitePatterns	Protein kinases ATP-binding region signature.	140	163	IPR017441	GO:0005524
Seca11g03228	484	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	63	477	-	-
Seca11g03228	484	Pfam	Protein kinase domain	135	477	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca11g03228	484	ProSiteProfiles	Protein kinase domain profile.	134	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca11g03228	484	MobiDBLite	consensus disorder prediction	1	34	-	-
Seca11g03228	484	MobiDBLite	consensus disorder prediction	11	34	-	-
Seca11g03228	484	Gene3D	Transferase(Phosphotransferase) domain 1	215	479	-	-
Seca11g03228	484	Gene3D	Phosphorylase Kinase; domain 1	99	214	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g03228	Seca-Chr11	70520167	70533165	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g03228	140	361	MAP Kinase Gene Family	AT3G45640	37.500	7.19e-32	124

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Seca11g03228		Pkinase	3.3e-49	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g03228	K18670		-	gmx:100792777	817.764

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