Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03225 ATGGTAGAAAAACATAACAAGGATCAAGGGTCTCAGGATGCTAACAGCAACAGCATCGCCAACAAAGGAGATGGGTCACTCAAATTACGCATCAAGATCAATATGAAGGCGAAGGGTATTAGAAACAAGAATGAGCAAGCTTGCTTGTGTGATCATCATACCTGCAACTGCAACAAAGGTAAAGCTTTGGGTGGACACATGAGAATGCATGCCCTCAACAAGAAACAAATTCACAAGGGCAAAGAAGTGACTCAGGGTTGCAGAAGGAACTCAGTGAATAGGAATCCCACTTGTTCCCTGTGCAGAAGGAACTTCCCTTCCATGAAGTCCTTGTATGGCCACATGAGGCTCCACTCTAAAAGGCAGAGCATGGGAACTCAACCCCTCACCACCTCACATGATGCTACATCATCCAACTCTTCTTCTGATGATTCTATTTCTAATGTTGATATATCTAGCTCTCTCTCCAAGGGATGGTCTGTGACTGCTAACAGAGGCCGCAAAAGGATGTCTTCTTGCATTGAAAATTCTGATTTGGAAGTTGAAGAAGCTGCACGAGGTGGTGATGTTTTAGGAGCAGAGCTAGCTGCTATCTTGCAGGGTTTAAAGCTTTGTTGGGATCTCCACTTGAGAGATGTTAAATGCATGACAGACTCTCAACTTGCTCTTTCTCTTATTTTGGGTGAGGGAACCAATACTGAGAATGACCAACATCCTATGGATGAGTTGAAGCTGCTCCTTTGTGCGGATGCTCTTGGCTTAGCTTTCATTAGATTGTAG 780 0.441 MVEKHNKDQGSQDANSNSIANKGDGSLKLRIKINMKAKGIRNKNEQACLCDHHTCNCNKGKALGGHMRMHALNKKQIHKGKEVTQGCRRNSVNRNPTCSLCRRNFPSMKSLYGHMRLHSKRQSMGTQPLTTSHDATSSNSSSDDSISNVDISSSLSKGWSVTANRGRKRMSSCIENSDLEVEEAARGGDVLGAELAAILQGLKLCWDLHLRDVKCMTDSQLALSLILGEGTNTENDQHPMDELKLLLCADALGLAFIRL. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03225 259 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 89 158 - -
Seca11g03225 259 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Seca11g03225 259 Gene3D - 152 249 IPR036397 GO:0003676
Seca11g03225 259 MobiDBLite consensus disorder prediction 119 149 - -
Seca11g03225 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Seca11g03225 259 MobiDBLite consensus disorder prediction 1 23 - -
Seca11g03225 259 Pfam Reverse transcriptase-like 186 242 IPR002156 GO:0003676|GO:0004523
Seca11g03225 259 SUPERFAMILY Ribonuclease H-like 193 234 IPR012337 -
Seca11g03225 259 MobiDBLite consensus disorder prediction 120 149 - -
Seca11g03225 259 SUPERFAMILY beta-beta-alpha zinc fingers 96 122 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03225 Seca-Chr11 70485198 70486682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03225 28 132 C2H2 Transcription Factor Family AT2G26940 28.030 6.44e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g03225 RVT_3 2e-06 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03225 - - gmx:102667003 104.375