Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03220 ATGCATAGTGTCAAATTTTATCTTTTCTGTCCCCCCATTTTACCCCTTTTTATTGGCAGGGTTGGCGGTTCTTATGATGAAAGACAATTTATAGATGAAAGATATCAAAGGGATGCATTATACCAGAGAAATACTTTCCACCGAGATGTTTTGGATAGGGAGGCCTATATGCCACCAGGACCTGCTGTTGGCCACTGGAGTCAATCCAAGCGGAGAGGTTATGATGAAGATTATCCACTTGAAAGGGAATCTAGACGTTTTCAGAGGCCTTATCATGAATCATATAATCAGATTGATGGTTTCAGGGATCGTGAGATTGACATGTACCCTGAATATGATAAGTTTCGGGATGGTTATAACAACATTGAAAATTATGGTGACCGGGGATATGATAAACCTGCCAGGTTTGTAGGACATGACCATGATGATGACTATGGATATGATGATTATGGCTACAAGTCCCGTGTATCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGATAGTAATTGGAGGAGACGTGAATCACGTGATCGGGAACGGGACAAGAGATGTCTTAGTCGTGAAAGAGATCCAAGTCCACATAGGAGACATGAGCGTTCCCGTTCTCGATCCCGGTCCCATTCCCATTCTCGTTCCCGTTCCCAATCTCGTGGATATGATGATCATCCAAAATCTAGGTCCCCTCGGGGTCGAAGCCATAGTCGAAGTTATCGAGAAGACAGCTATGTTGACGGTCGATATGATAGAAGTGAAAGACGCAGGGATCGTGAGGATAAACGTCAGCGCGAGCATTATTCTGTGGCCCCGTCTGCAACTGTTGTTGTGAAAGGTCTATCACAGAAGACGACTGAAGAAGATCTATATCAAATCCTTGCTGAGTGGGGGCCCCTTCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCATATCTCGAGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAGCTAGGAGATGATGGTCTTGTCGTGGACGGAAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTGCAGGTCCAGATGGAGCTATGAAATCAGGTCATGGTCATAAGAGCATTACAGTACCATCTGATTGGATGTGCACTATATGTGGCTACATCAATTTTGCACGCCGGACTTCCTGCTATCAGTGTAATGAGCCACGAACAGATGATGCTCCTGCAGCAGATATTTCATTATCGAATTCGACAGCTTCAGGAAAGAAAGGTTTGGAGGCAGGTCCAACTCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAATTTTCCAAACATGCTCCAATCAAGGATCTACGTCTTGTGAGAGACAAGTTTACTCATGTTTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGAACAACACTTGAGAAGAATGGGCAGATTCTAAGAGTAGCATATGCAAAAAGTATATTGGGTCCTGGATCAGGACCGTCAGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAATCCAGATGAAAAACAATCTACTGGTGCAGAGCAAACTGGCACAGAAGTTGGTGCTCCACAATCAGGCTTTATTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGATTTTATTATGATGGGAATACTGGTATATTTCTTGGTTGA 1863 0.4359 MHSVKFYLFCPPILPLFIGRVGGSYDERQFIDERYQRDALYQRNTFHRDVLDREAYMPPGPAVGHWSQSKRRGYDEDYPLERESRRFQRPYHESYNQIDGFRDREIDMYPEYDKFRDGYNNIENYGDRGYDKPARFVGHDHDDDYGYDDYGYKSRVSHHRREDSHERDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRCLSRERDPSPHRRHERSRSRSRSHSHSRSRSQSRGYDDHPKSRSPRGRSHSRSYREDSYVDGRYDRSERRRDREDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQGMMDKLGDDGLVVDGRKLFFEYSSKPTGGAGPDGAMKSGHGHKSITVPSDWMCTICGYINFARRTSCYQCNEPRTDDAPAADISLSNSTASGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGPSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDEKQSTGAEQTGTEVGAPQSGFIWDEASGYYYDAASGFYYDGNTGIFLG. 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03220 620 PANTHER RNA-BINDING PROTEIN 189 617 - -
Seca11g03220 620 MobiDBLite consensus disorder prediction 155 285 - -
Seca11g03220 620 MobiDBLite consensus disorder prediction 218 232 - -
Seca11g03220 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 448 528 IPR000504 GO:0003723
Seca11g03220 620 Gene3D - 392 423 - -
Seca11g03220 620 Gene3D - 428 553 IPR012677 -
Seca11g03220 620 MobiDBLite consensus disorder prediction 155 217 - -
Seca11g03220 620 SMART zf_4 395 419 IPR001876 -
Seca11g03220 620 SMART rrm1_1 292 367 IPR000504 GO:0003723
Seca11g03220 620 SMART rrm1_1 449 524 IPR000504 GO:0003723
Seca11g03220 620 SUPERFAMILY RNA-binding domain, RBD 281 374 IPR035979 GO:0003676
Seca11g03220 620 SUPERFAMILY Ran binding protein zinc finger-like 388 423 IPR036443 -
Seca11g03220 620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 371 IPR000504 GO:0003723
Seca11g03220 620 Pfam OCRE domain 590 618 IPR041591 -
Seca11g03220 620 CDD RRM1_RRM2_RBM5_like 446 526 - -
Seca11g03220 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 352 IPR000504 GO:0003723
Seca11g03220 620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 450 516 IPR000504 GO:0003723
Seca11g03220 620 ProSitePatterns Zinc finger RanBP2-type signature. 397 416 IPR001876 -
Seca11g03220 620 Gene3D - 256 391 IPR012677 -
Seca11g03220 620 ProSiteProfiles Zinc finger RanBP2 type profile. 393 422 IPR001876 -
Seca11g03220 620 SUPERFAMILY RNA-binding domain, RBD 446 538 IPR035979 GO:0003676
Seca11g03220 620 MobiDBLite consensus disorder prediction 566 590 - -
Seca11g03220 620 MobiDBLite consensus disorder prediction 233 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03220 Seca-Chr11 70229940 70235405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03220 290 512 Eukaryotic Initiation Factors Gene Family AT2G36660 25.896 1.85e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03220 K13094 - gmx:100787998 962.6