Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03219 ATGTTGTTTTATTCATTTTCATTTTATTTTTCATATTCTACCTTGTTGTGGCATGTAGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACATCCCTTGCACTGATCAAAGTCAGAATAAAACAGCTAATAATGAGTCTGAACCTTCCAAGGCATCTGATGGTTCCAGCAGTAAAAAGGTGGTGATTTCTGCTCCAGCTACTACTGTTACATCAATTGAGAAACCAGCTTCATTGGCTGATGCTGTCCAAGCTGCTGCAACGGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAAATCAAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCACGAGGGGCAGGCTACTCGAGTGGCTCTGGAGGACAATCAGTTGTCTGTTTCATCTGATGATAGATCACATTCTTCTGGACATTCTGCAAAGAATAAATTAAAAACTGAGACTATGGTAAGGGAAAGTAATGCATCTAATCTGGGAAATCACACAACTCTTGCCCAGGTTGCTGCTAATGATTCTCTGGCACAACCACGGCCTGTCAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATAAGGGGCTCAGGTAGAGGGGTTGTTAAATCAGATACTTATTCTGGTGCTGCATCATCTATATCAAGTTCATCTCCAGCAATTGCAGATGCACAGACAATTGCTACTCCCTTTAAAACAGATGTATCCGCCCTGGGTTCATATACACCATCTGTGGCTGCTGGAAGTGGCCGAAGGAGGTTTTCAGAAATGCCTCATTCTGCTTCTACTCACAAGGAACAGCCTCAAACAACATACAGGGATCGTGCTGCTGAGAGGAGAAGTTTGTATGGCTCATCATCTTCAGTTGGGAATGATTTGGCTGACCTTGAAATTGGGGATTCAATGCCTGTTGAGAAGGCTCTAGCCTCTGAGAATAGAGGAAGCTTTAGTTTTACCATAGGTGTTAAATGTGTATTGACTTTTGAGAAAATATTTGTTTCTACCATATGTATCCTTGAAGATCGAGATTTCACAACAAGGAAGGGTGATCCAATGCCATTCCCTCCTGGGGTTGGTGGAGGACGCATGGTTGGAGATGTCAACCTTGATACTTTTGAGGTGATAACGGCAGACAAAGCAATTGATGAAAGCAATGTTGGTAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTAGGAAAGGATGGAAGTGGGATGATAGAGCCTGTCCAGACACAAGCCATGGAAAATAGAGCAGGACTTGGAAGTCAACAGAAGAAGTTGGACCCTAGCCTCGAGGTGCAGGCAGGGGATAGTTACAAGATGCTTATTCATAAAAAAGCGCTTGCCAGATTTCGGGAAATGTCAGAAAGTTAA 1464 0.431 MLFYSFSFYFSYSTLLWHVGLYYDGNNGIWYSYDHQTQQYIPCTDQSQNKTANNESEPSKASDGSSSKKVVISAPATTVTSIEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQLSVSSDDRSHSSGHSAKNKLKTETMVRESNASNLGNHTTLAQVAANDSLAQPRPVSNSLGGTLMGVIRGSGRGVVKSDTYSGAASSISSSSPAIADAQTIATPFKTDVSALGSYTPSVAAGSGRRRFSEMPHSASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSMPVEKALASENRGSFSFTIGVKCVLTFEKIFVSTICILEDRDFTTRKGDPMPFPPGVGGGRMVGDVNLDTFEVITADKAIDESNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSES. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03219 487 ProSiteProfiles G-patch domain profile. 409 455 IPR000467 GO:0003676
Seca11g03219 487 SMART G-patch_5 407 453 IPR000467 GO:0003676
Seca11g03219 487 MobiDBLite consensus disorder prediction 46 68 - -
Seca11g03219 487 MobiDBLite consensus disorder prediction 273 300 - -
Seca11g03219 487 Pfam G-patch domain 410 451 IPR000467 GO:0003676
Seca11g03219 487 PANTHER RNA-BINDING PROTEIN 20 482 - -
Seca11g03219 487 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03219 Seca-Chr11 70227034 70229453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03219 388 454 C2H2 Transcription Factor Family AT5G26610 41.791 1.04e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03219 K13094 - gmx:100787998 671.389