Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03188 ATGCTTGAAAACAGCTTCAAGCTTCATACCACTCTTAATCCTGTCCAGAAACAAGCACTTGCTGACCAATTGAATTTAAAGACAAGACAAATTGAAGTTTGGTTTCAGAACAGAAGAGCAAGAACAAAGTTGAAGCAAACAGAGGTGGATTATGAGTTGTTGAAAAAACAGTGTCAAACAAAAGGTTGA 189 0.3651 MLENSFKLHTTLNPVQKQALADQLNLKTRQIEVWFQNRRARTKLKQTEVDYELLKKQCQTKG. 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03188 62 CDD homeodomain 2 46 IPR001356 GO:0003677
Seca11g03188 62 Coils Coil 37 57 - -
Seca11g03188 62 Gene3D - 1 43 - -
Seca11g03188 62 SUPERFAMILY Homeodomain-like 1 54 IPR009057 -
Seca11g03188 62 ProSiteProfiles 'Homeobox' domain profile. 1 45 IPR001356 GO:0003677
Seca11g03188 62 SMART HOX_1 1 49 IPR001356 GO:0003677
Seca11g03188 62 Pfam Homeodomain 2 43 IPR001356 GO:0003677
Seca11g03188 62 ProSitePatterns 'Homeobox' domain signature. 20 43 IPR017970 GO:0000981|GO:0006355
Seca11g03188 62 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03188 Seca-Chr11 68490207 68491149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03188 1 60 Homeobox Transcription Factor Family AT4G37790 78.333 2.11e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca11g03188 Homeodomain 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03188 K09338 - gmx:100812222 113.235