Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03187 ATGCATTCAGCTATCAAAAGCAGCCACTACAAGATGCGTTTCGTCTATGCTCACTTTCCAATTAACGCTAGCATCACCAACAACAACTCTGCCATTGAGATCCGAAACTTCCTTGGCGAAAAGAAGATGTGGACAACAGAAACGATGGGAGAACTAAGCCCAACTCTTACATTTGCTTGGGTGAACTTTTTCTTTTCTAGATTTGTAGCAGCCAAGATACCCTTTCTTAGGAACATGTGCACAACCTTGGATTTCTGTTTTTATTTTTTAATACTTCAGTCTAATCCTGAAAATACGGTTGGAGTTCTCACGATGGCGGGGAAGGGTGTTCGAGTTTTGGTGACCCCTACCAGTGATTTGGGCAAGATCTTAGCTTGCATGCACGGTGAAGCCATTGCTTCGTAG 405 0.4321 MHSAIKSSHYKMRFVYAHFPINASITNNNSAIEIRNFLGEKKMWTTETMGELSPTLTFAWVNFFFSRFVAAKIPFLRNMCTTLDFCFYFLILQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGEAIAS. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03187 134 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 92 129 IPR027040 GO:0006511|GO:0008540
Seca11g03187 134 Gene3D von Willebrand factor, type A domain 75 134 IPR036465 -
Seca11g03187 134 SUPERFAMILY Ribosomal protein L6 9 52 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca11g03187 134 Gene3D - 9 57 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03187 Seca-Chr11 68485198 68490177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03187 10 49 Cytoplasmic Ribosomal Protein Gene Family AT4G10450 72.500 8.93e-16 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03187 K03029 - csin:114285261 78.1814