Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca11g03185 | ATGGACACACAAAATCCCCTCCAGACTGCAGAAACTAATGAGAAGCCCAAACACCCCGCACCTGTAAGAGTCAAAACTCTTAACCGTCTCAGCTTCTCCAAACCCAAATCCCGAATCCTTGAATATAACTACCCACTCCGCACCAACAAACTAACAACCTCTGAAGAAATCGACATCCAACCTTCCTACAAGTTCTCTTCCCTCGATGAAGAAGACGACGACGACGAATGGGACGACGAAGAAGAAGAGCTTGAGGACGAAGACGATGGTGATGAAGAGCACGGTCCAAAGTCACGCCAAAAGAAGAAATTCAAGGTGAAGTGGAGGCTCCTGATGGAGTGGGTTTTATTCCTCAACATACTAACATGCCTCGTGTGTTCCCTCACCATAACTTCCATAACAAACATGCACGTGTGGGGTTTAGAGATATGGAAGTGGTGTTTGATGGTAATGGTCACATTCAGTGGCCGTTTGGTGTCAGGGTGGTTAGTTGGCGTAACCGTTTTCATCATCGAGCGAAACTTCATGTTAAGAGAGAAGGTCTTATACTTCATCTACGGCCTCAGAAAGAGCATAAGAAACTGTTTATGGTTAGGCCTCGTTCTTCTCTCTTATTGGAGCGTCGTCTTCGACGATGTGCAGAAGAAAAACCACAAGTTCCTCAACAAACTATTTCAAGCACTTGTGGCTGTGTTAGTAGGTGCTACCATATGGTTAGTGAAGATCGTGCTGGTGAAGGTCTTAGCCTCGTCGTTTCATGTAGCAACTTATTTTGACAGAATGAAAGAGAGCGTTTTCCATCACTACGTATTGGACACGCTTTCGGGTCCACCTATGGATGCTGAGCAAATGCTGCTGCAAGAGCACCACCTGAGTGGGTCCAAGTCGATGCCGGCGAGGTGGAAGGAAGGGAGGAAGTTGAAGAGATTTGGGTCGAGGAAGATTGATATGGAGAAGTTGAGAGAGCTCAGCATGGAGAGCACTGCATCTGCGTGGAGTGTGAAGAGGCTTGTTAATTATGTTAGGTCTTCTGGATTGTCAACGATTTCAAGGACTGTGGATGATTTTGGGAGTGCTGAGTCTGAGATCAGCAGTGAGTGGGAAGCAAGAAATTGTGCTCAGAGGATTTTCAAGAATGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCACGAGATTTTTGAAGAGGGTTGAGATACATACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACTGGGAAGATTAGTAGGTCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAACGAAAAGCTCTAGCACAATCACTCAATGATACCAAAACAGCAGTGCAGCAGCTTCACAAGCTAGCAAGCGCGGTTGTGAGTGTGATAATAATCATTGTGGTCCTTTTGGTAATGGGGGTGGCTACATTTAAGATAATATTATTCTGCATTACACAAACCGTTTTAATAGGGGTTGCATTCCAAGGTACTTGCAAGACAGTCTTGGAGGCTATCATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGTGATCGCTGCGTCATTGATGGTGTTCAGATGACTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGACATGACAATGAGAAAATATATTATCCGAACGCAGTTTTGCTTTCTAAGCCAATAAGCAATTTCTATAGGAGTCCAGAGATGTGGGATTCAATTGATTTTACAATCGATGTAACAACTCCAATGGAGACTATCATTGCACTCAAGAAATCAATACAAATCGAATGGGACGACGAAGAAGAAGAGCTTGAGGACGAAGACGATGGTGATGAAGAGCACGGTCCAAAGTCACGCCAAAAGAAGAAATTCAAGGTGAAGTGGAGGCTCCTGATGGAGTGGGTTTTATTCCTCAACATACTAACATGCCTCGTGTGTTCCCTCACCATAACTTCCATAACAAACATGCACGTGTGGGGTTTAGAGATATGGAAGTGGTGTTTGATGGTAATGGTCACATTCAGTGGCCGTTTGGTGTCAGGGTGGTTAGTTGGCGTAACCGTTTTCATCATCGAGCGAAACTTCATGTTAAGAGAGAAGGTCTTATACTTCATCTACGGCCTCAGAAAGAGCATAAGAAACTGTTTATGGTTAGGCCTCGTTCTTCTCTCTTATTGGAGCGTCGTCTTCGACGATGTGCAGAAGAAAAACCACAAGTTCCTCAACAAACTATTTCAAGCACTTGTGGCTGTGTTAGTAGGTGCTACCATATGGTTAGTGAAGATCGTGCTGGTGAAGGTCTTAGCCTCGTCGTTTCATGTAGCAACTTATTTTGACAGAATGAAAGAGAGCGTTTTCCATCACTACGTATTGGACACGCTTTCGGGTCCACCTATGGATGCTGAGCAAATGCTGCTGCAAGAGCACCACCTGAGTGGGTCCAAGTCGATGCCGGCGAGGTGGAAGGAAGGGAGGAAGTTGAAGAGATTTGGGTCGAGGAAGATTGATATGGAGAAGTTGAGAGAGCTCAGCATGGAGAGCACTGCATCTGCGTGGAGTGTGAAGAGGCTTGTTAATTATGTTAGGTCTTCTGGATTGTCAACGATTTCAAGGACTGTGGATGATTTTGGGAGTGCTGAGTCTGAGATCAGCAGTGAGTGGGAAGCAAGAAATTGTGCTCAGAGGATTTTCAAGAATGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCACGAGATTTTTGAAGAGGGTTGAGATACATACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACTGGGAAGATTAGTAGGTCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAACGAAAAGCTCTAGCACAATCACTCAATGATACCAAAACAGCAGTGCAGCAGCTTCACAAGCTAGCAAGCGCGGTTGTGAGTGTGATAATAATCATTGTGGTCCTTTTGGTAATGGGGGTGGCTACATTTAAGATAATATTATTCTGCATTACACAAACCGTTTTAATAGGGGTTGCATTCCAAGGTACTTGCAAGACAGTCTTGGAGGCTATCATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGTGATCGCTGCGTCATTGATGGTGTTCAGATGACTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGACATGACAATGAGAAAATATATTATCCGAACGCAGTTTTGCTTTCTAAGCCAATAAGCAATTTCTATAGGAGTCCAGAGATGTGGGATTCAATTGATTTTACAATCGATGTAACAACTCCAATGGAGACTATCATTGCACTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATTGCAAAACAAATAGAAAATGTGGACAAGTTGAAGCTGTGCTTATGTGTGCAACACACCATCAACCATCAGAACTACGGGCAACGAAACATTAGGATAACGGAGCTCCTCTTGGAATTGAAAAAGATATTTGAGATCCATGGTGTCAAGTACCATCTTCTTCCTCAAGAGATCCACCTTACCCAGATGAACCTTGAAAATGGGAGAGTTCTGTTTCAATCATGA | 3603 | 0.4338 | MDTQNPLQTAETNEKPKHPAPVRVKTLNRLSFSKPKSRILEYNYPLRTNKLTTSEEIDIQPSYKFSSLDEEDDDDEWDDEEEELEDEDDGDEEHGPKSRQKKKFKVKWRLLMEWVLFLNILTCLVCSLTITSITNMHVWGLEIWKWCLMVMVTFSGRLVSGWLVGVTVFIIERNFMLREKVLYFIYGLRKSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKLFQALVAVLVGATIWLVKIVLVKVLASSFHVATYFDRMKESVFHHYVLDTLSGPPMDAEQMLLQEHHLSGSKSMPARWKEGRKLKRFGSRKIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGSAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLTRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVVLLVMGVATFKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVQMTVEEMNILTTVFLRHDNEKIYYPNAVLLSKPISNFYRSPEMWDSIDFTIDVTTPMETIIALKKSIQIEWDDEEEELEDEDDGDEEHGPKSRQKKKFKVKWRLLMEWVLFLNILTCLVCSLTITSITNMHVWGLEIWKWCLMVMVTFSGRLVSGWLVGVTVFIIERNFMLREKVLYFIYGLRKSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKLFQALVAVLVGATIWLVKIVLVKVLASSFHVATYFDRMKESVFHHYVLDTLSGPPMDAEQMLLQEHHLSGSKSMPARWKEGRKLKRFGSRKIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGSAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLTRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVVLLVMGVATFKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVQMTVEEMNILTTVFLRHDNEKIYYPNAVLLSKPISNFYRSPEMWDSIDFTIDVTTPMETIIALKKSIQMYIESKPKYWNPKHSVIAKQIENVDKLKLCLCVQHTINHQNYGQRNIRITELLLELKKIFEIHGVKYHLLPQEIHLTQMNLENGRVLFQS. | 1201 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca11g03185 | 1200 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Seca11g03185 | 1200 | MobiDBLite | consensus disorder prediction | 68 | 91 | - | - | |
| Seca11g03185 | 1200 | MobiDBLite | consensus disorder prediction | 61 | 98 | - | - | |
| Seca11g03185 | 1200 | FunFam | Predicted mechanosensitive ion channel | 512 | 561 | - | - | |
| Seca11g03185 | 1200 | FunFam | Predicted mechanosensitive ion channel | 1030 | 1079 | - | - | |
| Seca11g03185 | 1200 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 602 | 1190 | IPR016688 | - | |
| Seca11g03185 | 1200 | SUPERFAMILY | Sm-like ribonucleoproteins | 503 | 561 | IPR010920 | - | |
| Seca11g03185 | 1200 | Pfam | Mechanosensitive ion channel | 971 | 1176 | IPR006685 | GO:0016020|GO:0055085 | |
| Seca11g03185 | 1200 | Pfam | Mechanosensitive ion channel | 453 | 600 | IPR006685 | GO:0016020|GO:0055085 | |
| Seca11g03185 | 1200 | Gene3D | - | 512 | 561 | IPR023408 | - |
Showing 1 to 10 of 12 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca11g03185 | K22048 | - | gmx:100813521 | 1015.37 |
Showing 1 to 1 of 1 entries