Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03185 ATGGACACACAAAATCCCCTCCAGACTGCAGAAACTAATGAGAAGCCCAAACACCCCGCACCTGTAAGAGTCAAAACTCTTAACCGTCTCAGCTTCTCCAAACCCAAATCCCGAATCCTTGAATATAACTACCCACTCCGCACCAACAAACTAACAACCTCTGAAGAAATCGACATCCAACCTTCCTACAAGTTCTCTTCCCTCGATGAAGAAGACGACGACGACGAATGGGACGACGAAGAAGAAGAGCTTGAGGACGAAGACGATGGTGATGAAGAGCACGGTCCAAAGTCACGCCAAAAGAAGAAATTCAAGGTGAAGTGGAGGCTCCTGATGGAGTGGGTTTTATTCCTCAACATACTAACATGCCTCGTGTGTTCCCTCACCATAACTTCCATAACAAACATGCACGTGTGGGGTTTAGAGATATGGAAGTGGTGTTTGATGGTAATGGTCACATTCAGTGGCCGTTTGGTGTCAGGGTGGTTAGTTGGCGTAACCGTTTTCATCATCGAGCGAAACTTCATGTTAAGAGAGAAGGTCTTATACTTCATCTACGGCCTCAGAAAGAGCATAAGAAACTGTTTATGGTTAGGCCTCGTTCTTCTCTCTTATTGGAGCGTCGTCTTCGACGATGTGCAGAAGAAAAACCACAAGTTCCTCAACAAACTATTTCAAGCACTTGTGGCTGTGTTAGTAGGTGCTACCATATGGTTAGTGAAGATCGTGCTGGTGAAGGTCTTAGCCTCGTCGTTTCATGTAGCAACTTATTTTGACAGAATGAAAGAGAGCGTTTTCCATCACTACGTATTGGACACGCTTTCGGGTCCACCTATGGATGCTGAGCAAATGCTGCTGCAAGAGCACCACCTGAGTGGGTCCAAGTCGATGCCGGCGAGGTGGAAGGAAGGGAGGAAGTTGAAGAGATTTGGGTCGAGGAAGATTGATATGGAGAAGTTGAGAGAGCTCAGCATGGAGAGCACTGCATCTGCGTGGAGTGTGAAGAGGCTTGTTAATTATGTTAGGTCTTCTGGATTGTCAACGATTTCAAGGACTGTGGATGATTTTGGGAGTGCTGAGTCTGAGATCAGCAGTGAGTGGGAAGCAAGAAATTGTGCTCAGAGGATTTTCAAGAATGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCACGAGATTTTTGAAGAGGGTTGAGATACATACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACTGGGAAGATTAGTAGGTCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAACGAAAAGCTCTAGCACAATCACTCAATGATACCAAAACAGCAGTGCAGCAGCTTCACAAGCTAGCAAGCGCGGTTGTGAGTGTGATAATAATCATTGTGGTCCTTTTGGTAATGGGGGTGGCTACATTTAAGATAATATTATTCTGCATTACACAAACCGTTTTAATAGGGGTTGCATTCCAAGGTACTTGCAAGACAGTCTTGGAGGCTATCATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGTGATCGCTGCGTCATTGATGGTGTTCAGATGACTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGACATGACAATGAGAAAATATATTATCCGAACGCAGTTTTGCTTTCTAAGCCAATAAGCAATTTCTATAGGAGTCCAGAGATGTGGGATTCAATTGATTTTACAATCGATGTAACAACTCCAATGGAGACTATCATTGCACTCAAGAAATCAATACAAATCGAATGGGACGACGAAGAAGAAGAGCTTGAGGACGAAGACGATGGTGATGAAGAGCACGGTCCAAAGTCACGCCAAAAGAAGAAATTCAAGGTGAAGTGGAGGCTCCTGATGGAGTGGGTTTTATTCCTCAACATACTAACATGCCTCGTGTGTTCCCTCACCATAACTTCCATAACAAACATGCACGTGTGGGGTTTAGAGATATGGAAGTGGTGTTTGATGGTAATGGTCACATTCAGTGGCCGTTTGGTGTCAGGGTGGTTAGTTGGCGTAACCGTTTTCATCATCGAGCGAAACTTCATGTTAAGAGAGAAGGTCTTATACTTCATCTACGGCCTCAGAAAGAGCATAAGAAACTGTTTATGGTTAGGCCTCGTTCTTCTCTCTTATTGGAGCGTCGTCTTCGACGATGTGCAGAAGAAAAACCACAAGTTCCTCAACAAACTATTTCAAGCACTTGTGGCTGTGTTAGTAGGTGCTACCATATGGTTAGTGAAGATCGTGCTGGTGAAGGTCTTAGCCTCGTCGTTTCATGTAGCAACTTATTTTGACAGAATGAAAGAGAGCGTTTTCCATCACTACGTATTGGACACGCTTTCGGGTCCACCTATGGATGCTGAGCAAATGCTGCTGCAAGAGCACCACCTGAGTGGGTCCAAGTCGATGCCGGCGAGGTGGAAGGAAGGGAGGAAGTTGAAGAGATTTGGGTCGAGGAAGATTGATATGGAGAAGTTGAGAGAGCTCAGCATGGAGAGCACTGCATCTGCGTGGAGTGTGAAGAGGCTTGTTAATTATGTTAGGTCTTCTGGATTGTCAACGATTTCAAGGACTGTGGATGATTTTGGGAGTGCTGAGTCTGAGATCAGCAGTGAGTGGGAAGCAAGAAATTGTGCTCAGAGGATTTTCAAGAATGTTGCCAAACCTGGTGCCAAGTATATTGAAGAGGAGGATCTCACGAGATTTTTGAAGAGGGTTGAGATACATACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACTGGGAAGATTAGTAGGTCTTCATTTAGAAATTGGGTGATTCGAGCTTATTATGAACGAAAAGCTCTAGCACAATCACTCAATGATACCAAAACAGCAGTGCAGCAGCTTCACAAGCTAGCAAGCGCGGTTGTGAGTGTGATAATAATCATTGTGGTCCTTTTGGTAATGGGGGTGGCTACATTTAAGATAATATTATTCTGCATTACACAAACCGTTTTAATAGGGGTTGCATTCCAAGGTACTTGCAAGACAGTCTTGGAGGCTATCATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGTGATCGCTGCGTCATTGATGGTGTTCAGATGACTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGACATGACAATGAGAAAATATATTATCCGAACGCAGTTTTGCTTTCTAAGCCAATAAGCAATTTCTATAGGAGTCCAGAGATGTGGGATTCAATTGATTTTACAATCGATGTAACAACTCCAATGGAGACTATCATTGCACTCAAGAAATCAATACAAATGTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATTGCAAAACAAATAGAAAATGTGGACAAGTTGAAGCTGTGCTTATGTGTGCAACACACCATCAACCATCAGAACTACGGGCAACGAAACATTAGGATAACGGAGCTCCTCTTGGAATTGAAAAAGATATTTGAGATCCATGGTGTCAAGTACCATCTTCTTCCTCAAGAGATCCACCTTACCCAGATGAACCTTGAAAATGGGAGAGTTCTGTTTCAATCATGA 3603 0.4338 MDTQNPLQTAETNEKPKHPAPVRVKTLNRLSFSKPKSRILEYNYPLRTNKLTTSEEIDIQPSYKFSSLDEEDDDDEWDDEEEELEDEDDGDEEHGPKSRQKKKFKVKWRLLMEWVLFLNILTCLVCSLTITSITNMHVWGLEIWKWCLMVMVTFSGRLVSGWLVGVTVFIIERNFMLREKVLYFIYGLRKSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKLFQALVAVLVGATIWLVKIVLVKVLASSFHVATYFDRMKESVFHHYVLDTLSGPPMDAEQMLLQEHHLSGSKSMPARWKEGRKLKRFGSRKIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGSAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLTRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVVLLVMGVATFKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVQMTVEEMNILTTVFLRHDNEKIYYPNAVLLSKPISNFYRSPEMWDSIDFTIDVTTPMETIIALKKSIQIEWDDEEEELEDEDDGDEEHGPKSRQKKKFKVKWRLLMEWVLFLNILTCLVCSLTITSITNMHVWGLEIWKWCLMVMVTFSGRLVSGWLVGVTVFIIERNFMLREKVLYFIYGLRKSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKLFQALVAVLVGATIWLVKIVLVKVLASSFHVATYFDRMKESVFHHYVLDTLSGPPMDAEQMLLQEHHLSGSKSMPARWKEGRKLKRFGSRKIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFGSAESEISSEWEARNCAQRIFKNVAKPGAKYIEEEDLTRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVVLLVMGVATFKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVQMTVEEMNILTTVFLRHDNEKIYYPNAVLLSKPISNFYRSPEMWDSIDFTIDVTTPMETIIALKKSIQMYIESKPKYWNPKHSVIAKQIENVDKLKLCLCVQHTINHQNYGQRNIRITELLLELKKIFEIHGVKYHLLPQEIHLTQMNLENGRVLFQS. 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03185 1200 MobiDBLite consensus disorder prediction 1 26 - -
Seca11g03185 1200 MobiDBLite consensus disorder prediction 68 91 - -
Seca11g03185 1200 MobiDBLite consensus disorder prediction 61 98 - -
Seca11g03185 1200 FunFam Predicted mechanosensitive ion channel 512 561 - -
Seca11g03185 1200 FunFam Predicted mechanosensitive ion channel 1030 1079 - -
Seca11g03185 1200 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 602 1190 IPR016688 -
Seca11g03185 1200 SUPERFAMILY Sm-like ribonucleoproteins 503 561 IPR010920 -
Seca11g03185 1200 Pfam Mechanosensitive ion channel 971 1176 IPR006685 GO:0016020|GO:0055085
Seca11g03185 1200 Pfam Mechanosensitive ion channel 453 600 IPR006685 GO:0016020|GO:0055085
Seca11g03185 1200 Gene3D - 512 561 IPR023408 -
Seca11g03185 1200 Gene3D - 1030 1079 IPR023408 -
Seca11g03185 1200 SUPERFAMILY Sm-like ribonucleoproteins 1021 1079 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03185 Seca-Chr11 68306654 68330385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03185 13 591 Mechanosensitive Ion Channel Family AT5G12080 43.833 1.72e-158 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03185 K22048 - gmx:100813521 1015.37