LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g03179	ATGTTGAGCATAAGCAAAGAAGGAAACCTAATCCTTCTCAGCAAGAATGGCACTGTTCATTGGTCAACAAACTCAACAAGAAAGGCCTTGAGTCCAATTGTGCAGCTCTTAAACACTGGGAATTTAGTACTAAGAGATAAAGAGGACAACAACAACAAAAATGAAGAAATTTTCTTGTGGCAGAGCTTTGACTATCCTTCAAATACACTCTTGCCAGGGATGAAGCTTGGTTGGGATAGAAAAACAGGTTTCAATAGACATGTAACTGCTTGGAAGAATTGGGATGATCCATCTCCAGGGGACTTTACTTGGGGTATTACACTTGACAACAACAACCCTGAAATGGCACTATGGAAAGGCTCAGAAGAGTATCACAGGAGTGGTCCTTGGAATGGTGCTAGATTCAGTGGTGCATTTAGTGGTTCAAATGTGTTAAGCACTCATCCACTTTACCTTTACAAATTGGTCAACAATGAAGATGAGGTTAATGACTCACCTGTGTGTCAGTGTTTAGAAGGATTTGAGCCAAAAAGTTCTCAGAATTTGGAGATTAAAGGATGTGTTCGTAGTGAACCGTGGAGCTGCAGGGTTGAAGGCAGAGATGGTTTTCGAAGATTTGTTGGGTTGAAATTTCCAGATACTACTCATTCTTGGGTTAATAAAAGCATGACACTTGAGGATTGCAAGGCTAAATGCTTGGAGAATTGTTCATGTAATGCTTATGCAAATTATGACATAAGAGGAGGAGATGCTAAACATGACCATAAGAAAAAGGCAATCTTGGTAATTACAATCGCACTTCCAATTATTTTTGTGATGCTTTTGTCATTCTCCTACATTTACAGGAGCAGAAGAAATTACAGAGGCTATATGCCTAAGAAATTTACCTCTGTAATTTCTTCTGCTCCTATTAACGGTGTGTTTGGGCAAGGTGGTTTTGGACCTGTATATAAGGGTATACTAGCAAATGGACAAGAGATTGCTGTGAAAAGGCTTTCAACAAGTTCTGGACAAGGATTAAAAGAATTTAAGAATGAAGTTATATTATGTGCCAAACTTCAACATCGAAATCTTGTTAAGATTCTTGGTTATTGCATTGATGGAGAAGAGAAAATGCTAATCTATGAATACATGCCTAACAAAAGTCTAGATTCATTTCTTTTCGATTCAACTCAAAGGAAGTGTTTAGACTGGTCCAAGAGCTTCCACATTTTGTGCTCAATTGCTCGAGGGCTTCTTTATCTACATCAAGATTCTATATTAAGAATAATACATAGAGATCTAAAAGCGAGCAATGTTTTATTAGATGACAACATGAACCCAAAAATTTCAGACTTTGGGTTGGCCAGAATGTGTGGAGGTGATCAAATTGAAGGAAATACGAACAGGGTAGTTGGAACATATGGCTATATGGCACCTGAATATGTTACTCATGGATTATTCTCCACAAAATCTGATGTATTTAGCTTTGACATATTGATGTTGGAAATTGCATGGCGATTGTGGAAACAACGCATACCAAACGAATTGATTGATACTTGTCTCGAGGACTCGTGTATCCTATTAGAAGCCTTACGTTGCATTCATATTGGTCTTTTATGCCTACAACGTCAACCTGATGATCGACCAAACATGGCATATGTAGTTATGATGTTAAGCAGTGAGAGTGATTTACCTCAACTAAAGGAACCTGGTTTCTTAATAGACAATATCCCAAATGAAGAAGAATATCCTTTTAGAAAGCATACTTCTTCTACTAATGAAGTAACTATTTCGATATTAGATGCTAGATAA	1794	0.3751	MLSISKEGNLILLSKNGTVHWSTNSTRKALSPIVQLLNTGNLVLRDKEDNNNKNEEIFLWQSFDYPSNTLLPGMKLGWDRKTGFNRHVTAWKNWDDPSPGDFTWGITLDNNNPEMALWKGSEEYHRSGPWNGARFSGAFSGSNVLSTHPLYLYKLVNNEDEVNDSPVCQCLEGFEPKSSQNLEIKGCVRSEPWSCRVEGRDGFRRFVGLKFPDTTHSWVNKSMTLEDCKAKCLENCSCNAYANYDIRGGDAKHDHKKKAILVITIALPIIFVMLLSFSYIYRSRRNYRGYMPKKFTSVISSAPINGVFGQGGFGPVYKGILANGQEIAVKRLSTSSGQGLKEFKNEVILCAKLQHRNLVKILGYCIDGEEKMLIYEYMPNKSLDSFLFDSTQRKCLDWSKSFHILCSIARGLLYLHQDSILRIIHRDLKASNVLLDDNMNPKISDFGLARMCGGDQIEGNTNRVVGTYGYMAPEYVTHGLFSTKSDVFSFDILMLEIAWRLWKQRIPNELIDTCLEDSCILLEALRCIHIGLLCLQRQPDDRPNMAYVVMMLSSESDLPQLKEPGFLIDNIPNEEEYPFRKHTSSTNEVTISILDAR.	598

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g03179	597	Pfam	D-mannose binding lectin	2	92	IPR001480	-
	Seca11g03179	597	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	56	577	-	-
	Seca11g03179	597	SUPERFAMILY	alpha-D-mannose-specific plant lectins	2	97	IPR036426	-
	Seca11g03179	597	Pfam	Protein tyrosine and serine/threonine kinase	307	551	IPR001245	GO:0004672\|GO:0006468
	Seca11g03179	597	Pfam	PAN-like domain	195	249	IPR003609	-
	Seca11g03179	597	SUPERFAMILY	Protein kinase-like (PK-like)	300	569	IPR011009	-
	Seca11g03179	597	CDD	PAN_AP_plant	194	249	-	-
	Seca11g03179	597	Gene3D	-	1	63	IPR036426	-
	Seca11g03179	597	FunFam	Uncharacterized protein	314	377	-	-
	Seca11g03179	597	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	423	435	IPR008271	GO:0004672\|GO:0006468
	Seca11g03179	597	ProSiteProfiles	Bulb-type lectin domain profile.	1	57	IPR001480	-
	Seca11g03179	597	Pfam	Domain of unknown function (DUF3403)	553	597	IPR021820	GO:0004674
	Seca11g03179	597	Gene3D	Transferase(Phosphotransferase) domain 1	379	563	-	-
	Seca11g03179	597	ProSiteProfiles	Protein kinase domain profile.	302	561	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g03179	597	SMART	serkin_6	302	552	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g03179	597	Gene3D	Phosphorylase Kinase; domain 1	308	378	-	-
	Seca11g03179	597	ProSiteProfiles	PAN/Apple domain profile.	195	286	IPR003609	-
	Seca11g03179	597	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	378	498	-	-
	Seca11g03179	597	SMART	ntp_6	198	275	IPR003609	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g03179	Seca-Chr11	68114598	68120252	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g03179	259	597	Receptor kinase-like Gene Family	AT4G23220	46.174	2.55e-107	335

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca11g03179		PK_Tyr_Ser-Thr	7.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g03179	-		-	gmx:100776310	681.789