Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03177 ATGGAGTCGAGTGGGAACGAGTGTTTGACGGTTCGAGAGGTATGTGCAAATGGAAGCTGCATAAAAACATCAGAACTTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAAGCAGAAGCAGCATTGCGAGAAGGATTGTCGATCAATTCTGAGGAAGCAAGAGCTCTTCTTGGAAAATTAGAGTATCAGAGAGGTAATGTTGAAGGTGCTCTTCATGTGTTTGATGGTATTGATCTTCAAGCAGCTATACAGCGACTGCAAACTTCCCTTTCTGAGAAGCCACCCATCAAGAAGGGTCCTGCTCGTACTGAATCACCTACCTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTGAAAGCCAAGTCTCTACAAAAGCTGGGGAAATATACTGAAGCTGCTAATGAATGCAAGCATGTTCTTGATGCTGTTGAGAAGATATTTTGTCAGGGTATACCTGATACTCAAGTGGACAATAAATTGCAGGAAATAGTCAGCCATGCAGTGGAGCTCCTTCCAGAGCTTTGGAAACAGGCTGGTTGCTATTCTGAGGCAATTTCTGCTTATAGGCAAGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAAGCATTTGCTGTATTTTTGCTATACAGTGGGGTGGAGGCAAGTCCGCCTAGTTTAGCAGTTCAGATTGAAGGGTCTTATGTACCTAAAAATAATTTGGAAGAGGCAATTCTTCTTCTTATGATTCTTTTGAGGAAGTTTAGCCTAGGTAAGATAAAATGGGATCCTTCAATTATGGAACACCTGATATTTGCACTTTCAGCATGTGGCCAAACTTCTCTTTTAGCAAAGCAACTTGAAGAGTTGATGCCTGGTGTATATCACCGTATTGACCGTTGGAATTCTTTAGCTCTATGTTATAGTGGAGCTGGACAAGACAAAAGTGCTTTGAATCTTCTAAGGAAGTCTTTGCACAAACATGAGCGACCAGATGACCTTATATCATTATTATTGGCTGCCAGGATTTGCAGTGAGGATCCTCATCTTGCTGCTGAGGGAGCAGGATATGCACAGAGGGCAATCGATAATGCTCGAGGCTTACATGATCATTTGAAAGGTGTGGGTCTTAGGATGCTGGGCCTTTGCCTGGGAAAGCAAGCTAGGGTTGCTTCCTCTGACTTCGAGAGGTCTATGCTTCAGTCAAAAGCTTTGCAATCATTGGAGGAGGCCGTTAGATTAGAGCAAAACAATTCTGATCTAATTTTTGAATTGGCTGTTCAATATGCTGAGCACCGAAATTTGGCTGCTGCTTTACGCTGTGCTAAACAGTTCTTTGACAAAACTGGTGGCTCTAAACTAAAAGGTTGGAGATTGCTTGCTCTGGTTTTGTCTGCACAGAAAAGATTTTCAGAGGCTGAAGTGGTGACTGATGCTGCTTTAGATGAGACTGCAAAATGGGAGCAGGGGCCACTGTTCAGGCTAAAAGCCAAGCTGAAGATCTCCCAATTACGACCAATGGATGCTATTGAGATTTACCGGTACCTTCTTGCTTTGGTTCAAGCCCAGAGGAAATCCTCTGGACCTCTAAGACCTAGCTCACAGGCTGAGGACGATAAAATAAGAGAATTTGATGTTTGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAGAAGGCCAGAGAGTTGAAGGAATACTCAGGAGCGACAGTACACACTGAAGGTGTTATGTTTGAAGGCCGTGGACAAAACCCAGAAGCCCTTGCTGCTGCTGCTACAGCTGTCCTATTTGAACCAAACCATGCTCCAAGCAAGATCTTGATGGGTTCTTTGACGCTGAAAATGGGTCCTAAAGCTTTGCCTGTTGCTAGAAGCTTACTTTCTGATGCACTTAGATTAGAACCCACTAATCGCATGGCTTGGTATAACTTGGGATTAACTCACAAGGATGATGGCCGAATAGGTGATGCTGCTGACTGCTTTCAGGCAGCTTACATGCTTGATGAATCAGATCCCATTGAAAGTTTCAGCTGTATACATTGA 2085 0.4355 MESSGNECLTVREVCANGSCIKTSELEAKLDEGNIQEAEAALREGLSINSEEARALLGKLEYQRGNVEGALHVFDGIDLQAAIQRLQTSLSEKPPIKKGPARTESPTSVSQHAASLVLEAIYLKAKSLQKLGKYTEAANECKHVLDAVEKIFCQGIPDTQVDNKLQEIVSHAVELLPELWKQAGCYSEAISAYRQALLSQWNLDNDCCARIQKAFAVFLLYSGVEASPPSLAVQIEGSYVPKNNLEEAILLLMILLRKFSLGKIKWDPSIMEHLIFALSACGQTSLLAKQLEELMPGVYHRIDRWNSLALCYSGAGQDKSALNLLRKSLHKHERPDDLISLLLAARICSEDPHLAAEGAGYAQRAIDNARGLHDHLKGVGLRMLGLCLGKQARVASSDFERSMLQSKALQSLEEAVRLEQNNSDLIFELAVQYAEHRNLAAALRCAKQFFDKTGGSKLKGWRLLALVLSAQKRFSEAEVVTDAALDETAKWEQGPLFRLKAKLKISQLRPMDAIEIYRYLLALVQAQRKSSGPLRPSSQAEDDKIREFDVWHGLANLYASLSHWKDAEICLQKARELKEYSGATVHTEGVMFEGRGQNPEALAAAATAVLFEPNHAPSKILMGSLTLKMGPKALPVARSLLSDALRLEPTNRMAWYNLGLTHKDDGRIGDAADCFQAAYMLDESDPIESFSCIH. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03177 694 Gene3D Tetratricopeptide repeat domain 237 452 IPR011990 GO:0005515
Seca11g03177 694 Gene3D Tetratricopeptide repeat domain 24 204 IPR011990 GO:0005515
Seca11g03177 694 SUPERFAMILY TPR-like 118 444 IPR011990 GO:0005515
Seca11g03177 694 PANTHER PROTEIN NPG1 6 691 IPR043376 -
Seca11g03177 694 SUPERFAMILY TPR-like 30 325 IPR011990 GO:0005515
Seca11g03177 694 ProSiteProfiles TPR repeat profile. 652 685 IPR019734 GO:0005515
Seca11g03177 694 Gene3D Tetratricopeptide repeat domain 461 690 IPR011990 GO:0005515
Seca11g03177 694 Pfam Tetratricopeptide repeat 654 684 IPR019734 GO:0005515
Seca11g03177 694 Pfam Tetratricopeptide repeat 28 74 - -
Seca11g03177 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Seca11g03177 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Seca11g03177 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Seca11g03177 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Seca11g03177 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Seca11g03177 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Seca11g03177 694 SUPERFAMILY TPR-like 500 685 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03177 Seca-Chr11 68089113 68094694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03177 11 693 Calmodulin-binding Proteins AT2G43040 73.508 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03177 K21843 - gmx:100811897 1159.44