Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03173 ATGGCACCGGATAACAATGATCAGCCATCACCAGTCTTCAGTGGCAAATTTAGTGTGATACTAATTGCAATGGGTTCAGCTAGTTTCGTGGTTACAATGTACCATCTCATAGTCATATGCTGCCAACACTCAGCGGAAGCAAGGCGACAGAGGCATCTAGAACTGGTCACCACCGAAGCTGAGGCAACACCGAGCACTGAGAACAATTCGGTGGCACACCTGATTCCAGCCCACAAGTATGAGAAGAAGAGTTGTGATGAATATGATGATGGCACTTGTGCTGTGTGCTTAGGTGACTTTGAGGAGGGTGAAGAGGTTAAGACGTTGCCTTTGTGTACGCACTCTTTCCATGTACCCTGCATAGATATGTGGTTCCATTCTCACTCTACCTGTCCTGTTTGCCGCGCTGATGCCACACCCTCGCCGGCACCCCATCAGTCGCCGGAGCTTGTTTCCGGCGAGGTGAATGCACATCACAGTATAGATATGATGCAAATAGCTCTCGTGCAAAATGGGTTGGTTCGACGGTGA 531 0.4934 MAPDNNDQPSPVFSGKFSVILIAMGSASFVVTMYHLIVICCQHSAEARRQRHLELVTTEAEATPSTENNSVAHLIPAHKYEKKSCDEYDDGTCAVCLGDFEEGEEVKTLPLCTHSFHVPCIDMWFHSHSTCPVCRADATPSPAPHQSPELVSGEVNAHHSIDMMQIALVQNGLVRR. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03173 176 SMART ring_2 93 134 IPR001841 -
Seca11g03173 176 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 140 IPR044675 -
Seca11g03173 176 CDD RING-H2_EL5-like 93 135 - -
Seca11g03173 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 140 IPR013083 -
Seca11g03173 176 SUPERFAMILY RING/U-box 82 141 - -
Seca11g03173 176 Pfam Ring finger domain 92 135 IPR001841 -
Seca11g03173 176 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03173 Seca-Chr11 67366086 67369617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03173 19 147 C3H Transcription Factor Family AT5G17600 37.857 1.19e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03173 - - lja:Lj0g3v0111029.1 217.624