Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03163 ATGAAACAGCCATCAAAGCCATGGAGGCCATTAACAACAAACTGCTGCACAATTGAGGACCAAACAATCCTTGGCAATTTCAGTCGCTACAAGCGCTCAACTTCAAATGTGTCCAAGGACACTGTTTATTCACCTTCTTCATTTCATTGGCTGTTTTCCTCTGATCTTAGCCAGTCCTCGTTCATAAGATCCAATGAGGGTGGATTTGGAACAGTTCATAAGGGTTATATTGATGGCAACTTGAGATGTGGTTTGAAAGCCCAACCTGTTGCTGTTAAGGTTCTCGACATTGAAGGCTTACAAGGACACCGTGAGTGGCTTGCAGAAGTGATATTTCTTGGGCAGCTAAGACACCAAAATCTGGTCAAATTGATTGGCTATTGTTGTGAGGATGAAGAAAGGCTACTTGTCTATCAATTCATGCCAAGGGGAAGCTTGGAAAATCACTTGTTCAGAAGAACAACGTCACTACCATGGGCAACAAGACTAAAAATTATAGTAGGTGCAGCTAAAGGCCTTGCCTTCTTGCATGGATCTGAGAATCCAGTCATTTTCCGAGACCTCAAGACTTCAAACATCTTGCTTGATTCAGATTTCACAGCCAAACTCTCAGATTTTGGACTTGCAAAAATGGGGCCAGAGGGATCAAAGTCACATGTCACAACCAGAGTTATGGGCACTTATGGATATGCAGCCCCAGAATACATCTACACAGGGCACTTGACAACAAAGAGTGATGTTTATAGTTTTGGGGTAATCCTACTAGAACTGCTTACAGGAAGGAGAGCAATGGACAGGAAAAGACCAAAGACTGAGCAAAACCTTGTGAATTGGTCAAGATCATACTTGAATAATAGCAAGAGGTTGCGGTGCATCATGGATCCAAGGCTTGCAGGCCAATATTCTGTAAAGGGTGCAAAGGAGATGGCCCTTTTGGCATTGCAGTGCTTAAGCTTGGATCCTAAAGACAGGCCAAGAATGGTAACAGTTGTTGAAACTCTTGAAAGCTTGCAACAGTTCAAGGACATGGCAGTTACACGTGGACACTGGCCGGCATCACCACAATATAGTACAAATAGACCGTCCAATAAGGTGAAAATTGATCTTAGAGCAGGTGCAAACCACAAGAGGCTCTCTCCTCTAGTTTCAAACAGAACAACTTGA 1164 0.433 MKQPSKPWRPLTTNCCTIEDQTILGNFSRYKRSTSNVSKDTVYSPSSFHWLFSSDLSQSSFIRSNEGGFGTVHKGYIDGNLRCGLKAQPVAVKVLDIEGLQGHREWLAEVIFLGQLRHQNLVKLIGYCCEDEERLLVYQFMPRGSLENHLFRRTTSLPWATRLKIIVGAAKGLAFLHGSENPVIFRDLKTSNILLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTYGYAAPEYIYTGHLTTKSDVYSFGVILLELLTGRRAMDRKRPKTEQNLVNWSRSYLNNSKRLRCIMDPRLAGQYSVKGAKEMALLALQCLSLDPKDRPRMVTVVETLESLQQFKDMAVTRGHWPASPQYSTNRPSNKVKIDLRAGANHKRLSPLVSNRTT. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03163 387 Gene3D Transferase(Phosphotransferase) domain 1 142 349 - -
Seca11g03163 387 CDD STKc_IRAK 66 337 - -
Seca11g03163 387 SUPERFAMILY Protein kinase-like (PK-like) 65 335 IPR011009 -
Seca11g03163 387 PANTHER OS01G0588500 PROTEIN-RELATED 61 338 - -
Seca11g03163 387 SMART serkin_6 61 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03163 387 FunFam Serine/threonine-protein kinase PBS1 141 349 - -
Seca11g03163 387 Pfam Protein tyrosine and serine/threonine kinase 66 334 IPR001245 GO:0004672|GO:0006468
Seca11g03163 387 ProSiteProfiles Protein kinase domain profile. 58 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03163 387 Gene3D Phosphorylase Kinase; domain 1 65 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03163 Seca-Chr11 67136061 67139093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03163 14 377 Glycoside Hydrolase AT3G07070 45.405 2.39e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca11g03163 PK_Tyr_Ser-Thr 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03163 - - gmx:100804970 610.142