Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03145 ATGGGATCCAATGGTAGCAAAGCCACTTCCTCTTGTAGTTCCTCTACTACTTCGTCTTCTTCAGGGAGTTTCAGGAAGGGTCGATCTAAGGGCCTTAGAGGTGTTCATTCTTTTTGTCTTGGAACAAGTTCTGGATCTCACGACAGTGATAATGAAGACCAGGCTTGTGATCAGAATAAAGTAAATGGCAGTGATATTGCATACACAGATGACAATGAAACAGATTCAGATGAGGTGAAAACAGAGTCTTTTAGAAAGGTTAAAGCTGGTGAGATGACTTGTATGCCTTCTAACATTGACCTAGAAGAATGGGGTGAAACAGGCATCCCCAACACTTCGTCCAGAACTGGCAGCAGCTCTGTCCATGCTTCTTCAACTGATTCCTTGAACCCTAGAAATCGATTGCTTTCTCGGTTTAGCCTCATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCTCTAGTTTGGGATCATCAAGGCCTTGTCCTGTTTCTTCCGCAAGTCTCTCAATATTTGACAATGAAGACGAGCATAATATACATCCAGGACCTTCTGGCAGTTTGATTAACACAAATGAAACTAAAGTTTGCAATGACTTGCATCCTACATCTTTTTTCACTCAAATACCTACACAGTGTCATGAAGATGCTTCTAATAATTTAAGATCAAATGCCCCGGCATCAGGTTTGCCTAGCAACTTGCAGAGCAATCCCACAGGTGGAGATGGTAACAGAGAAGAGCTGGATATGAATTTATTTTCTCCGAGAATTCAAGCAGAGACAGAAAATGTTGAGACTAGACATATGGATCGACGAAATGGAGCTCGAGAGCCTGTTGAAAGGAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCTTCGTCGATCAACATTATCTGACCTCACCTTTTGCCCTCTGCAACAAGAGAGAGAACTGAGAGATGCTAGTCAGGATACAGGAAGGCAAGCAGTGGAGGGAGATTCAAGAGTGTCACCATCTGATAATAGTGCTCTTAATTCCTCTTCTACATCCGGATATCCTCTATCTAGCATGTCTAACACCATGCTTAGTATCCAAGACTATGAAGTCGAGACTTCACGATCAAGAGAAGGAAGGTATCAGGATCTGCTGGAACATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGTCACAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTCTCTGGACATGACAGATCATGTATCTTATCTGGTCAACATAGAAATGGTCGTTGTACATGCCGAATCAGAAATCGTGACACCAATTCAAACGATGATACCAATGCGAGAGCTAGCATATCAAGAATTGTTATGCTTGCAGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCTTCCCGCCCTTCTGTGTCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTGGAGTCCTTGCCCGTCAAACTATATGAGAAAAAGCATAAGCAGCAAGAAGATGCTGCACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACTCTGTGCGAGTACTGCCTTGTCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTATGTCGTGGGAACATCTGCATATCTGATTCATTGCCAACAGATAACTTAAGTGGCTAG 1725 0.4278 MGSNGSKATSSCSSSTTSSSSGSFRKGRSKGLRGVHSFCLGTSSGSHDSDNEDQACDQNKVNGSDIAYTDDNETDSDEVKTESFRKVKAGEMTCMPSNIDLEEWGETGIPNTSSRTGSSSVHASSTDSLNPRNRLLSRFSLIPGNISFRLSRTSSLGSSRPCPVSSASLSIFDNEDEHNIHPGPSGSLINTNETKVCNDLHPTSFFTQIPTQCHEDASNNLRSNAPASGLPSNLQSNPTGGDGNREELDMNLFSPRIQAETENVETRHMDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDLTFCPLQQERELRDASQDTGRQAVEGDSRVSPSDNSALNSSSTSGYPLSSMSNTMLSIQDYEVETSRSREGRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRIRNRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNDVVESLPVKLYEKKHKQQEDAAQCYICLVEYEDGDSVRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGNICISDSLPTDNLSG. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03145 574 Pfam Ring finger domain 515 558 IPR001841 -
Seca11g03145 574 MobiDBLite consensus disorder prediction 102 129 - -
Seca11g03145 574 ProSiteProfiles Zinc finger RING-type profile. 516 558 IPR001841 -
Seca11g03145 574 MobiDBLite consensus disorder prediction 107 129 - -
Seca11g03145 574 MobiDBLite consensus disorder prediction 327 357 - -
Seca11g03145 574 MobiDBLite consensus disorder prediction 216 247 - -
Seca11g03145 574 MobiDBLite consensus disorder prediction 216 242 - -
Seca11g03145 574 MobiDBLite consensus disorder prediction 1 26 - -
Seca11g03145 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 562 IPR013083 -
Seca11g03145 574 FunFam Putative RING zinc finger domain superfamily protein 485 563 - -
Seca11g03145 574 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 570 - -
Seca11g03145 574 SMART ring_2 516 557 IPR001841 -
Seca11g03145 574 MobiDBLite consensus disorder prediction 1 82 - -
Seca11g03145 574 SUPERFAMILY RING/U-box 494 565 - -
Seca11g03145 574 MobiDBLite consensus disorder prediction 317 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03145 Seca-Chr11 66633774 66640573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03145 242 565 C3H Transcription Factor Family AT5G45290 62.538 6.53e-122 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03145 - - gmx:100800896 842.802