Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03144 ATGAATCTTCCTTCATCCTTCTCCTGTACTGTCTGGTCCATATGCTTTCATGTGGTTCTTCTCTTCTCTGCCACCTTACTATGTTTACAACCTAAGAATACTGCTACTGCTAGTGCCTTAGGAAATGACACAGACCAATTGTCATTGCTCAGATTCAAAGAAGCAGTAGTAGAAGACCCCTTTGATATTTTGAGATCTTGGAATAGTTCAATTTACTTTTGCAATTGGCATGGAGTCACATGCAGCATCAGGCATAAAAGGGTCACTGCCCTGAACCTACAAGGGTATGCCTTAAGTGGGTTGATACCACCTGAGATTGGTAACCTCACCTTTCTAAGGTATGTCAACCTTCAAAACAACAGCTTCTATGGTGAAATTCCACAGGAAATAGGTCGTTTGTTCAGGCTGCAGGAGCTGTATCTCAACAATAACACATTAAGGGGTCAAATTCCCACCAATATGTCTCACTGTTCTGAACTCAAGAGCTTGAGTTTAACAAGAAACAGACTTGTTGGCAAAATACCTATGGAGCTTGGTTTTCTAACTAAGCTAGAAATGCTATCTATTGCTATGAACAATTTGACAGGTGAAATCCCTGCATCTATAGGAAATCTTTCATCTCTTAGTATTCTCACTTTGGGAATCAATAACTTGGAGGGAAATGTACCAGAAGAGATAGGCTATCTGAAAAACTTGACACATATCTCTATTGCATCTAACAAACTGTCTGGTATGCTTCCTTCTACACTCTTTAATATGTCATCTCTCACTTTTTTCTCAGCTGGAGCCAACCAATTTAATGGCTCTCTACCTGACAACATGTTCCTTACACTTCCTAATCTCCAACAATTTGGTATTGGTATGAATAAGATCTCAGGTCCTATCCCAGCTTCCATCTCCAATGCAACCAGTTTGCTGTTATTTAACATTCCTAGGAATAACTTTGTTGGACAAGTTCCAACTGGGATAGGAAACCTTAAAGATATCTGGTCAATTGCTATGGAAAGAAATCATCTAGGGAGTAATTCATCTAATGATTTGGATTTCTTGACATCTTTGACAAATTGCACCAACTTACAAGTGTTGGATTTAAATCTAAACAACTTTGGTGGTTCTTTACCCGACTCTGTAGCCAACTTTTCAAGTCAACTAAACCAGTTTTATATTGGTGGCAATCAGATTACTGGGACTATTCCTTCAGGGTTAGGAAATCTCATCAACTTGATTGGCTTGGACTTGGAGTTCAACCTTCTCACAGGGTCCATTCCTGCTTCTTTTGGGAGGTTTCAAAAGATACAATCATTGACTTTAAATGTAAACAAACTTTCAGGAAAAATTCCATCATCCATTGGCAACCTTAGTCAGCTGTTTCAACTTGACTTATCAAACAACATCTGGAAGGAAGCATTCCTCCTAGTCATTGGTCTTCCCTCCTTGTCATTGTTACTGAACTTATCCCATAACTCATTAAATGGAAGCCTACCCTTTGAAGTTGGCAACCTGAAAAGCATCAATAAGTTGGATGCTTCTAAAAATGATCTGTCTGGTGAAATTCCTTCAACAATTGGACAGTGCATAAGCTTGGAATACCTTAACTTACAAGGGAATTCCTTCCATGGAGCCATACCTTCATCCTTGGCTTCATTGAAAGGCCTTCAGTATTTAGATTTGTCACAAAACAACTTGTCTGGATCAATTCCTGAAGGTCTAGAGGATATTCCTGTTCTACAGTACTTGAATATGTCATTTAACAGGTTGGATGGTGAAGTACCAAAAGAAGGTGTCTTTAGAAATGCAAGTGCAGTATCAGTAGAAGGCAACAATGACCTTTGTGGGGGTATCACAGAGCTACATCTACCATCATGCCCTGTCAAAGATAAGACACACAAAAAACATCAGACTTGGAAGGTAATAGTAATAATAATTTCTGTGGGTTTCTTTCTTCTACTGTTATCATTCTCTATTGTTGTCTTTTGGAAGAAGAAAACAAAGAGAACATCAACTTCATCACCAACAATGGACCATCTTGCCAAAGTCTCATACCAGACACTCCACCAAGCAACAAATGGTTTCTCTCCCAATAACTTGATAGGATCTGGTGCTTTTGGCTTTGTATATAAAGGAACTATTGAGTCAGAAGAAAGACCTGTTGCTATAAAGGTCCTGAACCTTCAAAACAAAGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTCAGAAACATCCGTCACAGAAACCTGGTTAGGATTATAACATGTTGCTCAAGTATGGATTACAATGGAAATGAATTCAAAGCCTTAGTTTTTGAGTACATGGAAAATGGAAGCTTGGAGAAATGGTTGCATCCTGAGTCAGAAATTGGAGATCAATTAAGTTTGAACCTTCTTCAAAGACTAAATATTCTCATAGATATTGGTTCTGCACTACACTATCTTCACTATGAGTGTGAGCAGCCAATTGTTCACTGTGATTTAAAGCCATGCAATGTCCTTCTTGATAATGACATGGTTGCTCATGTTAGTGATTTTGGACTAGCAAGACTTCTTTGTGTCATCAATGGTATCTCTGATCTGCAAACAAGCACAATTGGAATCAAGGGAACTGTTGGGTATGCTCCTCCAGAGTATGGAATGGGAGGTCAAGTTTCAACACTAGGTGATGTGTATAGTTTTGGAATCCTTATACTGGAAATACTAACTGGGAGGAAACCTACACATGAAATGTTTACAAATGGAATGAATCTCCATACTTTTGTCAAGGTTTCCTTGCCAGATAAACTCCTACAAATAGTGGACTCAACCCTGCTTCCAAGAGAATTGAAACAAACGACTCTATCAGCAGAAGAAGATAACAATAGTGATCAGAACCTGAGCCAGATGGATCCTAGTGATCTTAAGAAGTGCTTACTTGATCTGTTTCACATTGGACTTGCTTGTTCAGCAGAATCTCCGAAAGAAAGAATGAATATGAAGGATGTCACCAGGGAATTAGATCAAATAAAAAATGCTCTTTCTCGGAGGAGACTGATCTAA 3036 0.3877 MNLPSSFSCTVWSICFHVVLLFSATLLCLQPKNTATASALGNDTDQLSLLRFKEAVVEDPFDILRSWNSSIYFCNWHGVTCSIRHKRVTALNLQGYALSGLIPPEIGNLTFLRYVNLQNNSFYGEIPQEIGRLFRLQELYLNNNTLRGQIPTNMSHCSELKSLSLTRNRLVGKIPMELGFLTKLEMLSIAMNNLTGEIPASIGNLSSLSILTLGINNLEGNVPEEIGYLKNLTHISIASNKLSGMLPSTLFNMSSLTFFSAGANQFNGSLPDNMFLTLPNLQQFGIGMNKISGPIPASISNATSLLLFNIPRNNFVGQVPTGIGNLKDIWSIAMERNHLGSNSSNDLDFLTSLTNCTNLQVLDLNLNNFGGSLPDSVANFSSQLNQFYIGGNQITGTIPSGLGNLINLIGLDLEFNLLTGSIPASFGRFQKIQSLTLNVNKLSGKIPSSIGNLSQLFQLDLSNNIWKEAFLLVIGLPSLSLLLNLSHNSLNGSLPFEVGNLKSINKLDASKNDLSGEIPSTIGQCISLEYLNLQGNSFHGAIPSSLASLKGLQYLDLSQNNLSGSIPEGLEDIPVLQYLNMSFNRLDGEVPKEGVFRNASAVSVEGNNDLCGGITELHLPSCPVKDKTHKKHQTWKVIVIIISVGFFLLLLSFSIVVFWKKKTKRTSTSSPTMDHLAKVSYQTLHQATNGFSPNNLIGSGAFGFVYKGTIESEERPVAIKVLNLQNKGAHKSFIAECNALRNIRHRNLVRIITCCSSMDYNGNEFKALVFEYMENGSLEKWLHPESEIGDQLSLNLLQRLNILIDIGSALHYLHYECEQPIVHCDLKPCNVLLDNDMVAHVSDFGLARLLCVINGISDLQTSTIGIKGTVGYAPPEYGMGGQVSTLGDVYSFGILILEILTGRKPTHEMFTNGMNLHTFVKVSLPDKLLQIVDSTLLPRELKQTTLSAEEDNNSDQNLSQMDPSDLKKCLLDLFHIGLACSAESPKERMNMKDVTRELDQIKNALSRRRLI. 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03144 1011 Gene3D Ribonuclease Inhibitor 42 201 IPR032675 -
Seca11g03144 1011 Gene3D Ribonuclease Inhibitor 211 470 IPR032675 -
Seca11g03144 1011 Pfam Leucine rich repeat N-terminal domain 43 82 IPR013210 -
Seca11g03144 1011 Gene3D Phosphorylase Kinase; domain 1 653 772 - -
Seca11g03144 1011 SUPERFAMILY Protein kinase-like (PK-like) 665 998 IPR011009 -
Seca11g03144 1011 FunFam Leucine-rich repeat receptor-like protein kinase TDR 354 624 - -
Seca11g03144 1011 SUPERFAMILY L domain-like 44 339 - -
Seca11g03144 1011 SMART serkin_6 691 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03144 1011 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 44 155 - -
Seca11g03144 1011 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 773 1010 - -
Seca11g03144 1011 SMART LRR_typ_2 229 253 IPR003591 -
Seca11g03144 1011 SMART LRR_typ_2 573 598 IPR003591 -
Seca11g03144 1011 SMART LRR_typ_2 549 572 IPR003591 -
Seca11g03144 1011 SMART LRR_typ_2 405 428 IPR003591 -
Seca11g03144 1011 SMART LRR_typ_2 181 205 IPR003591 -
Seca11g03144 1011 SMART LRR_typ_2 133 157 IPR003591 -
Seca11g03144 1011 Pfam Protein kinase domain 694 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03144 1011 SUPERFAMILY L domain-like 349 612 - -
Seca11g03144 1011 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 165 353 - -
Seca11g03144 1011 Gene3D Transferase(Phosphotransferase) domain 1 773 1009 - -
Seca11g03144 1011 FunFam LRR receptor-like serine/threonine-protein kinase EFR 661 772 - -
Seca11g03144 1011 Pfam Leucine rich repeat 527 586 IPR001611 GO:0005515
Seca11g03144 1011 Gene3D Ribonuclease Inhibitor 477 620 IPR032675 -
Seca11g03144 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Seca11g03144 1011 SMART LRR_sd22_2 181 207 - -
Seca11g03144 1011 SMART LRR_sd22_2 229 255 - -
Seca11g03144 1011 SMART LRR_sd22_2 429 455 - -
Seca11g03144 1011 SMART LRR_sd22_2 549 572 - -
Seca11g03144 1011 ProSiteProfiles Protein kinase domain profile. 691 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03144 1011 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Seca11g03144 1011 PANTHER OS04G0122200 PROTEIN 227 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03144 Seca-Chr11 66571495 66574878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03144 42 1002 Receptor kinase-like Gene Family AT3G47570 45.792 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca11g03144 Pkinase 6.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03144 - - qsu:112010890 1104.74