Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03137 ATGACTATCCATTTCAACAACCAACAAGATCTAGAAACTACCAACAAGGGCTTTGAGTTGGATGACTCGGTCTCTAACACCAAAACTCATGTTGCTACTCCTGCGGAATTGGGAAATGTGTCTTATGATGATAAGGTTGTTGTTATGGTGGATTCTGATGCCTCAAAGAAAATAACACACACCTTTGGCAAAAGGACTTCTATTTACAGAGGAGTTACAAGGCATCGATGGACAGGTAGATATGAGGCACATTTGTGGGATAATAAGTGCAAAAAAGAGGGCCAGACCAAGATAGGGCGTCAAGGTGGGTATGATAACGAAGAAAAGGCCGTGAGAGCTTATGATTTAGCACCTCTAAAATATTGGGGACAATCAGCCACCACTAACTTTCCTGTTTCCAATTATGCAAAGGAATTGGAGGAGATGCAATATGTAGGAAAGCAGGAATATATTACATCATTGAGAAGGAATAGTAATGCCTTTTCAAGGGGAGTTTCCATATATAGAGGTGTTTCAAGGTTTGAAATTTAG 531 0.4011 MTIHFNNQQDLETTNKGFELDDSVSNTKTHVATPAELGNVSYDDKVVVMVDSDASKKITHTFGKRTSIYRGVTRHRWTGRYEAHLWDNKCKKEGQTKIGRQGGYDNEEKAVRAYDLAPLKYWGQSATTNFPVSNYAKELEEMQYVGKQEYITSLRRNSNAFSRGVSIYRGVSRFEI. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03137 176 SMART rav1_2 68 137 IPR001471 GO:0003700|GO:0006355
Seca11g03137 176 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Seca11g03137 176 PRINTS Ethylene responsive element binding protein signature 113 133 IPR001471 GO:0003700|GO:0006355
Seca11g03137 176 Pfam AP2 domain 68 123 IPR001471 GO:0003700|GO:0006355
Seca11g03137 176 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g03137 176 Gene3D AP2/ERF domain 68 133 IPR036955 GO:0003700|GO:0006355
Seca11g03137 176 CDD AP2 67 133 IPR001471 GO:0003700|GO:0006355
Seca11g03137 176 SUPERFAMILY DNA-binding domain 67 133 IPR016177 GO:0003677
Seca11g03137 176 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 33 171 - -
Seca11g03137 176 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03137 Seca-Chr11 66243557 66246190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03137 53 173 AP2-EREBP Transcription Factor Family AT5G65510 71.774 8.42e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g03137 AP2 2.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03137 K09285 - jre:108990656 220.705