Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03119 ATGGGCAATATTGGGGATTCTCGAGCAATCATGGGATCCAAGGACAGCAATGACGCCATGGTGGCAGTTCAATTGACTGTTGATTTGAAGCATGATTTGCCAAGAGAAGCAGAAAGAATTAAGCGTTGCAAGGGTAGGGTATTTGCACTGCAAGATGAGCCAGAAGTGCCTAGGGTATGGTTGCCTTTTGATGATGCTCCAGGATTAGCAACGGCTAGAGCATTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTTCTCACCGGCTGCTTACAGACACAGATCGATTCATTGTTCTTGCCTCAGACGGGGTAAGAATTTTCATTCTTATATCTATTTCTTCAATTTGTTTAATTTTGCTTTGCTATTTTGGGAATTGTTTTATTATTTTGTATCCCTCTATGACTGGTAAATTCCAACATATAAGATTCTACAATTTTAAAGTTAGTTTCTGTTGGTTAATACGACATTGTGAGTGCCATGGAGAAATCATCTTACCTGGTCAAGTTGTGATGTGA 534 0.3951 MGNIGDSRAIMGSKDSNDAMVAVQLTVDLKHDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLATARAFGDFCLKEYGVISIPEFSHRLLTDTDRFIVLASDGVRIFILISISSICLILLCYFGNCFIILYPSMTGKFQHIRFYNFKVSFCWLIRHCECHGEIILPGQVVM. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03119 177 ProSiteProfiles PPM-type phosphatase domain profile. 1 177 IPR001932 -
Seca11g03119 177 Gene3D - 1 114 IPR036457 -
Seca11g03119 177 SUPERFAMILY PP2C-like 2 110 IPR036457 -
Seca11g03119 177 CDD PP2Cc 2 110 IPR001932 -
Seca11g03119 177 PANTHER PROTEIN PHOSPHATASE 2 110 IPR015655 GO:0004722|GO:0006470
Seca11g03119 177 Pfam Protein phosphatase 2C 2 110 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03119 Seca-Chr11 64942356 64942982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03119 1 110 PP2C-type Phosphatase Gene Family AT1G03590 89.091 9.33e-66 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03119 - - cit:102615376 209.534