Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03109 ATGCCACAAACATGCATAATAGCACCCAAACCAGAACCAGAACACAGCATGAATCACCCTGTGGAAGTGCCACAAGAGATGACTGAGCACCATAACTCAACTGTCCTTTCCTACCGCATACAAACTAATGACCAATCTTTCCAAAAACTCACTATGTACCCCATAACTTTGAAGTTTGAGGAATTGGTGTACAAAGTTAAATTAGAGCAGAAAGGTCTTTGTTGGGGTAGCAGAGGGACTTGCAGAGAGAAGACCATATTGAATGGTGTTTCAGGTATGGTTTTCCCAGGTGAAATAGTGGCTATGTTGGGGCCATCTGGAAGTGGCAAAACCACACTTCTCACAGCACTTGGAGGACGTCTTAGTGGCAAATTATCTGGAAAGATCACATACAACAATCAGCCTTTCTCAGGTACCATGAAAAGAAGAACAGGTTTTGTGGCCCAAGATGATGTGTTATACCCTCATCTCACAGTAATTGAGACTCTAGTCTTCACTGCACTTTTAAGGCTGCCTAATAGTTTGACCAGGTATGAGAAAGTTCAACATGTAGAGAATGTCATCAATGAGCTAGGACTGACAAGGTGCAGGAATAGCATGATTGGAGGCCCACTTTTCAGAGGAATATCAGGTGGAGAGAAAAAGAGGGTGAGTATAGGCCAGGAAATGCTCATCAATCCAAGTCTCTTGCTGTTAGATGAGCCCACTTCAGGTTTGGACTCAACAACAGCACAAAGGATACTCAACACAATCAAATGCCTTGCTAGTGGAGGCAGAACTGTTGTCACTACCATTCATCAACCTTCTAGTCGTCTCTACCATATGTTTGATAAGGTGGTCTTGCTCTCTGAAGGGTGTCCCATCTATTATGGCCCTGCTTCAACTGCCATGGAGTACTTTTCCTCAATTGGTTTTTCCACACCCATGACTGTCAATCCAGCTGATTTGTTGCTTGATCTTGCTAATGGGATTGCCCCAGATTCCAAGCATGCAACTGAACAAAGTGAGAGCCAGGAGCCAGAAAGGAAGTTGGTGAGAGAAGCCCTTGTCTCTGCCTATGAAAAGAACATAGCTACAAGGCTGAAAGCTGAGTTTTGCAGCTTGGAGGTGAACAACTACAACATCACCAAAGATGCTTCTGCAAGAAATCATGTAAAACCAGAACAATGGTGCACAAGTTGGTGGCATCAGTTTAAAGTACTGTTGCAGAGGGGACTCAGGGAGAGAAGGTACGATGCCTTCAACAGGCTGAGAATATTCCAAGTCATAAGTGTTGCTTTTCTTGGTGGACTCCTGTGGTGGCAAACACCAGAATCTCACATTGGAGACCGTATAGCACTGCTCTTTTTCTTCTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCTGTTTTTACTTTTCCTCAAGAAAGAAGAATGCTGATAAAGGAAAGGTCATCAGGAATGTACCGTCTCTCTTCCTATTTTCTAGCTAGAACTATAGGAGACTTGCCATTGGAGCTTGCACTTCCAACTGCATTTGTCTTCATAATCTATTGGATGGGAGGGCTTAAACCTCATCCTGTGACCTTTATCCTTTCCCTTTTTGTGGTTCTTTATAGTGTCCTTGTTTCTCAAAGTCTTGGCTTAGCATTTGGTGCTATTTTGATGGAAGTTAAACAAGCCACTACTTTAGCTTCTGTGACAACACTTGTATTTCTCATTGCTGGAGGGTACTACATACAACAGATTCCTCCTTTCATAGAATGGCTCAAGTACTTAAGTTATAGCTACTATTGTTACAAGCTTCTTCTTGGGGTGCAGTACAATGATGATGATTATTATGAGTGCTCAAAAGGGGTCCTGTGCAAGGTTGGAGAATTTCCTCCTATAAAATCAATGGGTTTGAATCATATGTGGGTTGATGTGTTCATCATGGCCTTGATGTTAGTGGGTTATAGACTAGTTGCTTATTTAGCACTGCAGAGAGTGAGGTAG 1977 0.4279 MPQTCIIAPKPEPEHSMNHPVEVPQEMTEHHNSTVLSYRIQTNDQSFQKLTMYPITLKFEELVYKVKLEQKGLCWGSRGTCREKTILNGVSGMVFPGEIVAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNNQPFSGTMKRRTGFVAQDDVLYPHLTVIETLVFTALLRLPNSLTRYEKVQHVENVINELGLTRCRNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKCLASGGRTVVTTIHQPSSRLYHMFDKVVLLSEGCPIYYGPASTAMEYFSSIGFSTPMTVNPADLLLDLANGIAPDSKHATEQSESQEPERKLVREALVSAYEKNIATRLKAEFCSLEVNNYNITKDASARNHVKPEQWCTSWWHQFKVLLQRGLRERRYDAFNRLRIFQVISVAFLGGLLWWQTPESHIGDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPHPVTFILSLFVVLYSVLVSQSLGLAFGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIEWLKYLSYSYYCYKLLLGVQYNDDDYYECSKGVLCKVGEFPPIKSMGLNHMWVDVFIMALMLVGYRLVAYLALQRVR. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03109 658 Gene3D - 71 303 IPR027417 -
Seca11g03109 658 CDD ABCG_EPDR 54 291 - -
Seca11g03109 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 305 IPR027417 -
Seca11g03109 658 SMART AAA_5 96 286 IPR003593 GO:0016887
Seca11g03109 658 Pfam ABC-2 type transporter 397 602 IPR013525 GO:0016020|GO:0140359
Seca11g03109 658 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 36 651 - -
Seca11g03109 658 Pfam ABC-2 type transporter 266 355 IPR043926 GO:0140359
Seca11g03109 658 Pfam ABC transporter 87 237 IPR003439 GO:0005524
Seca11g03109 658 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 57 309 IPR003439 GO:0005524
Seca11g03109 658 ProSitePatterns ABC transporters family signature. 209 223 IPR017871 GO:0005524|GO:0016887
Seca11g03109 658 FunFam ABC transporter G family member 22 75 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03109 Seca-Chr11 63707352 63710507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03109 66 285 Calmodulin-binding Proteins AT2G36910 28.634 9.51e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03109 K05681 - gmx:100794774 1132.09