Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03050 ATGGCTATTGAAATGATTGATCTTACAGACTCTCCCCTATTACCACCCAAGTCACCATCTGAGGCACAAATGATCCTTAATTTTGATGTTGTTTTTGCAAAAAATGTTCAATTCGAAAATGCTCTTATGCCCCCATGGCCTTATTTGAATCCTATTCTTCACCATACTAACCAGCACCAAACTACTTTGTCACTGGCTCCATGGCTCACCCATGAGCCCTCTCAGAATATCACTACTCGAATCCAATCCAACATGAATGGTCATCAGGTTGATACGATTATTCAACCAGTACCTGAATCAAGCACATTCTTGCTTCCTCATGGTGTTAGGCCTGAGGAGCCTTGGACTGAAAAAGAGCATGGGTTATTTTTGGCGGGGCTAATCAAGTATGGAAAAGGACATTGGACAAAAATTGCTAAACACTTTCTAGCGAACAAGACACCACAACAAGTTCAAAGCTATGCTGCTGGCTTCTTCAGGAACCTACCAGCCACACACTTTGTAAACTTTAGGAGAAGGAAACCCTCCAATAATTATGCTGGTAGACTTATGGCCAGAAACAGGAACCTCATGAATGCACTTGCCTCACATTCCATGCAAATGGTTGTTAACAAACCACGACAAACCCTCACTCTCTTCCCAGAGAAAACTCTTTTTTCTCAGATTTCACCATTCAGAGAAGGTAGCAGCAACAACAACCATATCGACGGGTTCCAGAAGCTGACAGGTGGTACAAGCACTTCCATGACAACTTGTGCTAATGGAGAAGTTGATTTGGAACTGCGCTTGGGTTGA 795 0.4289 MAIEMIDLTDSPLLPPKSPSEAQMILNFDVVFAKNVQFENALMPPWPYLNPILHHTNQHQTTLSLAPWLTHEPSQNITTRIQSNMNGHQVDTIIQPVPESSTFLLPHGVRPEEPWTEKEHGLFLAGLIKYGKGHWTKIAKHFLANKTPQQVQSYAAGFFRNLPATHFVNFRRRKPSNNYAGRLMARNRNLMNALASHSMQMVVNKPRQTLTLFPEKTLFSQISPFREGSSNNNHIDGFQKLTGGTSTSMTTCANGEVDLELRLG. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03050 264 Pfam Myb-like DNA-binding domain 113 154 IPR001005 -
Seca11g03050 264 Gene3D - 113 163 - -
Seca11g03050 264 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 107 161 IPR043363 -
Seca11g03050 264 ProSiteProfiles Myb-like domain profile. 114 159 IPR001005 -
Seca11g03050 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 163 IPR017930 -
Seca11g03050 264 CDD SANT 114 155 IPR001005 -
Seca11g03050 264 SUPERFAMILY Homeodomain-like 114 162 IPR009057 -
Seca11g03050 264 ProSiteProfiles SANT domain profile. 110 163 IPR017884 -
Seca11g03050 264 SMART sant 111 161 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03050 Seca-Chr11 60633049 60634059 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca11g03050 Myb_DNA-binding 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03050 - - gmx:102663307 235.343