Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03046 ATGACTCGCACACTCAGAACCCTCCAATCCACAAACAACACCGCCACGGCGCCACCGCCGGAGGCAGCTTCCGTTGAATCAGACTTCGTCGTCATCCTCGCAGCGCTCCTCTGCGCCCTCATATGCGTCGTCGGCCTAACCGCCATCGCCCGCTGCGCCTGGCTCCGCCGTATCCCCATCGCCGGCGCCGGAAACTCGCCGAGGCGGACAGTCGCCAACAAGGGCCTCAAGAAGAAGGTGCTCAACTCGCTGCCGAAATTCACCTACGTCGACGGCAGCCCCGGCGGCAAGTGGGTGGCCACGTCGGAGTGCGCCATTTGCCTGTCGGAGTTCGCCGCCGGCGATGAGGTTCGGGTGCTGCCACAGTGCGGTCACGGCTTCCACGTGGCCTGCATAGACACGTGGCTTGGGTCCCACTCTTCGTGTCCCTCTTGCCGCGCTCCCTTCGCCGTCGCCAGGTGCCAGAAATGCGGCCTGTACCCGGTGGTTGCCGCCGGAGCCGCCACCGTCGCCGGTGAAACGGAGTCCAAGCCAGTAAGTGGCGACAATGTCCCTGCAGCTGCTAATGCGGTTGATAATTGTAATAATAGCAACGATATTGAGAGTCATAGTCACAGTGTTAATACTGGCTTCACTTTCTTGCCTTAA 648 0.6142 MTRTLRTLQSTNNTATAPPPEAASVESDFVVILAALLCALICVVGLTAIARCAWLRRIPIAGAGNSPRRTVANKGLKKKVLNSLPKFTYVDGSPGGKWVATSECAICLSEFAAGDEVRVLPQCGHGFHVACIDTWLGSHSSCPSCRAPFAVARCQKCGLYPVVAAGAATVAGETESKPVSGDNVPAAANAVDNCNNSNDIESHSHSVNTGFTFLP. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03046 215 MobiDBLite consensus disorder prediction 1 21 - -
Seca11g03046 215 Pfam Ring finger domain 103 146 IPR001841 -
Seca11g03046 215 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g03046 215 SUPERFAMILY RING/U-box 84 151 - -
Seca11g03046 215 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Seca11g03046 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 151 IPR013083 -
Seca11g03046 215 CDD RING-H2_EL5-like 103 146 - -
Seca11g03046 215 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 17 158 - -
Seca11g03046 215 SMART ring_2 104 145 IPR001841 -
Seca11g03046 215 FunFam E3 ubiquitin-protein ligase ATL6 65 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03046 Seca-Chr11 60535779 60536426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03046 1 185 C3H Transcription Factor Family AT1G20823 55.838 1.69e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03046 - - gmx:100787383 262.692