Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03035 ATGAATTTGATCACTTTTCGCGTTCCCTTTGTTCTCCTCTCCCTATTCGCTGTCTGCTCCAGCTTCAACGGCCACGTTGATGCACCCACCTCGGGAATCTCCTCATCCTCTCTTCTCCACGAAGAAGGTGTCAATGGATTTTCTCGACCCTCTGCTCGATCCCTCCTCTCTATTCCTCCTAACCCAGCAACTACAGCCCTGGTTGTATCACTAGATGGGACCATGTATTTGGTGGAAAGACCTGAGAGTGGTTCCATGAGAGTGATATGGTCATTCTCAACGGGATCGCCAATCTACAGTTCATATCAAGCTTCTGTCAACAAGGATAATGGTAAAGAAAATGCATCTGCACCACTAATTAACGGGTTTGTGGAATGCGGGGATGACTGGTCGTTGTACATGCATGACGAGCACTTTGGTAAAATGAGAATATCAGAATCTATTGCAGAATATGTAGCTCATACACCTACCTTTTCAGATGATGGAGCTGTTACACTAGGATCCAAAAGAAGCACTTTGTTTGAAGTTGATGCTAAAAATGGATCAATTCTTCATATCTATGCTATGTCTGATATTGATAATGCTTCTGCACCTTGGAGTGATAACAGGCAGAGTGTTGCAAATATCCTCAATGCAAAGAATAAGGATCTTTCTGATCCTGTGAAGCTAAATTCACCGCAGCTGCTGCTCAAGATTTTTAGGACAGATTATTCTCTACAATGTGTTGGTCCCACCTCAGGAATAGTTTTGTGGACCATGAAAGTCGCTGAATTTGAGGCTGTATTATTATGCCAACATACTTCATTTGATGTAGAGGATGGGTATGCTTCTGACAGTGGTCTCAATTTTGCGATGCCATACCCATGTCAAGAGATACAACAAGTCTTTCGTCTAAAAAAGAATTTTTTGTTAGAACCTTCTGTCACTGAAAGATTACCTGATGCTTATGGTAAAAGTGATATACTCTCAAAACCTACCTCAGATCTGATGCTTCCATTGCAGCCAAATATGGATAGATTTTTCGATGGTCATGATGGTAACATGATGCTTCCTGCCCCTATATCAAATTCTTTGCCTTCTCTGCAACCTGTACTCCCTCAGCCTCCCATGGAGATTATGACACCAGGGGAAGTTTACCTAAACCGGACAAGTAAATGGTCAACTCCGTTACTTCTTATATGGTTTATTGTCCCTCTTACGGGCTTTTCACTCTATTATTGTCTAGTGAAGGACCAAAACAGCGATTCTGAATTAAGAAGTTCACCTGCTAAGAAAAAGAAAACCCACAAGTCAGGTAGGAACAGTGTCACTGTTGATGAAAAGGAAAAGCATCTTTCTTCAGAAGATGAGGAACTGCTGACACAAATGGATACTGATAAAGAAATATGGCAGAACTTTAATCAAGTTGATGAAGGTGTTGATGGGCGAAGGGTTGGTAAATTATTTGTTTCTAATAAAGAGATTGCCAAGGGAAGCAATGGTACCATTGTCCTCGAGGGGATATATGAAGGCAGAGCAGTTGCTGTCAAACGTCTAGTCAAGGCTCATCACGATGTAGCCTATAAAGAAATCCAAAACCTCATTGTGTCTGACCATCATCCAAACATTGTCCGATGGCATGGGGTGGAGTATGATCAAGATTTTGTTTACCTTGCTCTGGAACGTTGTACATGCAACTTAGGTGATTTGATTCAAATTTATTCAGATATATCAGAAAACCCCATGTTCAGGAAGGACCAAGCTTTCAAATGTTTGATAAAGGCCCAAATAGAGACAGGGAAGGATAATACACAATATCTTTGGAAATCAAACGGCTACCCATCACCTCTATTGCTAAAACTCATGAGGGATGTTGTTTCTGGGCTTGTTCATTTACATGAAATAGGAATAATACATCGAGATTTGAAACCCCAAAATGTTCTAATAATCAAGGAAAGATCCTTATCTGCAAAGCTTTCAGATATGGGCATTAGCAAACGTCTTCTTGAAGATATGTCTTCTTTGGGTCATAATGCTACTGTCTGTTTTCTGTTCTTGGACACGATCATTGTGTCGTCAACGTCAGCATTGTCAAGGAGTGTCTTTTCTGGCCAAACAACCACTATCCGCTGCTGTACACCACCGTCTGCCAGCCATTTCCGGTCGGTGACCAGTGGATCTGAAGCATCTCCCTCTCAGGCCCACCTGTCTGCCCAAGTTTCATCGTCATTGAAGATTCTACACGCTCATATATGCCACTTGTATTGTATCTCTGCGCGTGAAGCTCACGTACCTCCCTTCCAGCCGCATGTGACAGAGCATCCAGGCTCCATTCTGGACACCTTTTGTTGTAGATTACTCTCCTCTCCCTCCTCTCTTCAGATCTGTGATATTCTTGGACAACCAGTATCAGGTTGCAGGAGAACTAGTACTTACAGCTGCGTGTTTCTCGCTTTTTGGGCTAAAATGTCCGATCCACTGCTGCCATTTCTGAGGAAGAACCCATGA 2487 0.4242 MNLITFRVPFVLLSLFAVCSSFNGHVDAPTSGISSSSLLHEEGVNGFSRPSARSLLSIPPNPATTALVVSLDGTMYLVERPESGSMRVIWSFSTGSPIYSSYQASVNKDNGKENASAPLINGFVECGDDWSLYMHDEHFGKMRISESIAEYVAHTPTFSDDGAVTLGSKRSTLFEVDAKNGSILHIYAMSDIDNASAPWSDNRQSVANILNAKNKDLSDPVKLNSPQLLLKIFRTDYSLQCVGPTSGIVLWTMKVAEFEAVLLCQHTSFDVEDGYASDSGLNFAMPYPCQEIQQVFRLKKNFLLEPSVTERLPDAYGKSDILSKPTSDLMLPLQPNMDRFFDGHDGNMMLPAPISNSLPSLQPVLPQPPMEIMTPGEVYLNRTSKWSTPLLLIWFIVPLTGFSLYYCLVKDQNSDSELRSSPAKKKKTHKSGRNSVTVDEKEKHLSSEDEELLTQMDTDKEIWQNFNQVDEGVDGRRVGKLFVSNKEIAKGSNGTIVLEGIYEGRAVAVKRLVKAHHDVAYKEIQNLIVSDHHPNIVRWHGVEYDQDFVYLALERCTCNLGDLIQIYSDISENPMFRKDQAFKCLIKAQIETGKDNTQYLWKSNGYPSPLLLKLMRDVVSGLVHLHEIGIIHRDLKPQNVLIIKERSLSAKLSDMGISKRLLEDMSSLGHNATVCFLFLDTIIVSSTSALSRSVFSGQTTTIRCCTPPSASHFRSVTSGSEASPSQAHLSAQVSSSLKILHAHICHLYCISAREAHVPPFQPHVTEHPGSILDTFCCRLLSSPSSLQICDILGQPVSGCRRTSTYSCVFLAFWAKMSDPLLPFLRKNP. 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03035 828 PANTHER IRE1-RELATED 143 672 IPR045133 GO:0004521|GO:0004674|GO:0030968
Seca11g03035 828 Gene3D - 57 279 IPR015943 GO:0005515
Seca11g03035 828 MobiDBLite consensus disorder prediction 416 451 - -
Seca11g03035 828 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 84 202 IPR011047 -
Seca11g03035 828 Pfam Protein kinase domain 484 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03035 828 Gene3D Transferase(Phosphotransferase) domain 1 580 708 - -
Seca11g03035 828 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 474 554 - -
Seca11g03035 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Seca11g03035 828 MobiDBLite consensus disorder prediction 432 451 - -
Seca11g03035 828 Gene3D Phosphorylase Kinase; domain 1 466 554 - -
Seca11g03035 828 ProSiteProfiles Protein kinase domain profile. 482 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03035 828 SUPERFAMILY Protein kinase-like (PK-like) 472 672 IPR011009 -
Seca11g03035 828 SMART serkin_6 482 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03035 Seca-Chr11 60169986 60177310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03035 482 659 Receptor kinase-like Gene Family AT1G07650 28.877 2.92e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Seca11g03035 Pkinase 1.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03035 K08852 - gmx:100788389 959.518