Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03034 ATGTCAAGTCTTGCAAACTTCACGCTCCAGATCTCCAACCTTGGGCGTGAGGGAGGTGGTGGTAGTTCAGGTTGGCAAGCACCAGAGCATCTTGTTCAAGGACGCCAAACTCGGGCTGTTGATATATTTAGTTTAGGTTGTGTCCTCTTTTTCTGCATGACTGGCGGAAGACATCCATTTGGAGAACATCTTGAACGTGATGTCAATATCGTGAAAAATAAAAAAGATCTTTTCTTAGTGAATTTCATTCCTGAAGCTGAGGATCTTATTAGTAGTTTATTAAATCCTGACCCTAATCTAAGGCCAAAGGCGATTGAAGTACTGCACCATCCTTTTTTCTGGAGTTCCGACATGAGACTTTCATTTTTACGTGACACCAGTGATAGGGTGGAACTGGAAGATAGAGAGATTGGTTCTGATCTTTTGAGGGGGATAGAAAACATTGCCACAGTGGCCTTAGGTGGAAAATGGAATGAAAGGATGGAACCAGCTTTCATTGCTAACATTGGTCATTACCGGCGATATAAGTTTAACAGTGTTCGAGACTTGCTGCGGGTTATGAGAAACAAGCTAAATCATTATAGAGAACTTCCTCGAGAAATCCAGGTTCTTTCTTGGACTGGCATTTAG 630 0.4222 MSSLANFTLQISNLGREGGGGSSGWQAPEHLVQGRQTRAVDIFSLGCVLFFCMTGGRHPFGEHLERDVNIVKNKKDLFLVNFIPEAEDLISSLLNPDPNLRPKAIEVLHHPFFWSSDMRLSFLRDTSDRVELEDREIGSDLLRGIENIATVALGGKWNERMEPAFIANIGHYRRYKFNSVRDLLRVMRNKLNHYRELPREIQVLSWTGI. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03034 209 Pfam Protein kinase domain 21 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03034 209 Pfam Ribonuclease 2-5A 119 202 IPR010513 GO:0004540|GO:0006397
Seca11g03034 209 SUPERFAMILY Protein kinase-like (PK-like) 20 124 IPR011009 -
Seca11g03034 209 Gene3D Transferase(Phosphotransferase) domain 1 5 115 - -
Seca11g03034 209 PANTHER IRE1-RELATED 12 204 IPR045133 GO:0004521|GO:0004674|GO:0030968
Seca11g03034 209 ProSiteProfiles Protein kinase domain profile. 1 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03034 209 Gene3D KEN domain 117 207 IPR038357 -
Seca11g03034 209 ProSiteProfiles KEN domain profile. 116 209 IPR010513 GO:0004540|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03034 Seca-Chr11 60167113 60169588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03034 4 112 MAP Kinase Kinase Kinase AT1G54960 30.252 2.73e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Seca11g03034 Pkinase 3.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03034 K08852 - gmx:100788389 329.331