Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03032 ATGATTAGAGTTTGGCTCGTGGTGTTGATTGTTCTCTCCAATGGGTTCTCTTCAACTGGGGTTGGCGTGGATAATTCCACAGTACCTGCTTTTGTAAATATTGGGGTTCTCTACTCTTTCAATACTAGTGTTGGTAGAATTGTGAAAATTGCTATAGAAGCTGCGGTTAAAGATGTAAATTCTGATCCATCTATTCTTGGTAACACTAAGTTGAAGGTCTCACTACAAGAAGATTCCAAGTACAGGGGTTTCTTGAGCATTGCTGAGGCCTTGCAACTCATGGCAACACAAACTGTGGCCATAATTGGACCCCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAGCTCCAAGTGCCTCTGCTATCATTTTCAGCCACTGACCCTACCCTTTCTTCACTTCAATTCCCATTCTTTATTAGAACTGCTTTTAGTGACATTTTCCAAATGACTGCAATAGCAGACCTGGTTAAATTCTATGGGTGGAGAGAGGTTATTGCAGTCTATGGTGATGATGACCATGGAAGGAATGGAATAGGTGCATTAGGGGATAAGCTTGCTCAGAGACGTTGCAAAATCTCATTTAAAGCACCAATGACTCCTGAGGCAACTAGGGAGGAGATTACTGATGTGCTTGTTCAGGTGGCCCTGGCAGAATCCCGGGTTATAGTTCTTCATACAAGTACTGCTTGGGGTCCAAAAGTGTTGAGTGTGGCAAAGTCTCTTGGGATGATGGAAAATGGTTATGTCTGGATTGCCACTAATTTTCTGACTAGTTGGTTGGACATAGATAGTCCCCTCCCTTCAGATACAATGGATAACATTCAAGGAGTTGTTACACTACGTATGTACATACCAGATTCAAAGCTCAAAAGACAGTTTGTTTCTAGGTGGAAAAACTTGACTGATGGAAAGACAGCTAATGGTTCCCTTGGTTTGAGTACTTATGGTATCTTTGCATATGATACTGTTTATGTGCTTGCTCGTGCACTTGATTCATTTTTCAAGAAAGGAAACCAAATCACATTTTCACATGATTCAAAGTTATCTGAACTACATGGAGACAACATGCATCTGGATGCTGTGAAAATCTTCAATGAAGGAAATCTGTTGAGGAAAAGTATTTATGAGGTTAACATGACTGGTGTATCAGGTCAATTTAAGTATACATCTGATGGAAACCTTGCTAATCCAGCATATGAAATCATCAATGTGATTGGAACAGGAACTAGGAGGATTGGTTATTGGTCTAATCACTCTGGATTATCAGTTGTTACTCCAGAAGCACTTTCTTCAAAATCACCTAATCATTCCACTCCAAGTCCAAAACTACTCACTGTGTTTTGGCCAGGGGAAACAACCCAGAGGCCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGATGTTAAAAATTGGAGTACCAAAAAGGGTTAGTTACCGTGAATTTGTCACTCAAGTACAAGCCACTGATATGTTCAAGGGATTCTGCATTGATGTATTTGTTTCTGCAGTAAACTTGTTGCCCTATGCTGTCCCCTATAAATTTGTTTCATATGGGGATGGTAACAGCAATCCTAGTAACACTGAGCTTGTGCGTATGATCACAACAGGCGTCTTTGATGCTGCAGTAGGTGACATCACAATTACTACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTTGTAGCATCAGTTAAGAAGATAGAATCCAATGCTTGGGCATTTTTTATGCCATTTACACCAATGATGTGGACTGTCACAGCCATCTTTTTCCTACTAGTGGGAGCTGTTGTTTGGATTTTAGAGCATAGGCTGAATGATGAGTTTAGGGGACCTCCCAAAAGACAAGTAGTCACAATTTTGTGGTTTAGTTTTTCAACTATGTTCTTTGCTCACAGGGAAAATACAGTGAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGCTATTTGTAGTTCTAATAATTAACTCAAGTTACACAGCAAGCCTGACTTCAATCCTCACAGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGAAAGTTTAATAAATAGCAAAGAGCCTATTGGCTACTTGCAGGGTTCTTTTACTCGAACTTATTTAATTGAGGAAATTGGTATTGATGAATCCAGATTAGTTCCTCTAAAAACACCAGAAGAAACTACAAAAGCACTGGAAAAAGGTCCCCAAAAGGGTGGTGTTGCTGCATACATTGATGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTATACTATTGTAGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCACGAGATTCGCCATTAGCAGTTGATCTTTCAACTGCCATTTTGGAGTTGGCAGAAAATGGAGATTTGCAAAGAATCCATGACAAATGGCTTTTGAGCAGTGCTTGCCTATCACAAGGTGCAAAGCTTGAAGTGGACAGACTCAATCTGAAAAGCTTTTGGGGCCTCTATTTGGTCTGTGGGTTGGCATGTTCACTTGCTCTCTTGATATATCTTTTTCAGACCCTGAGACAATACAACAAGCACCGCCCAGAGGAAGTTGAGTCTCCTGGCCAAGGCTCAGGATCTTCACGTTTGCGGACTTTTCTTTCATTTGTAGATGAAAAGGAAGAGATAGTTAAGAGCCGCTCCAAGAGAAGGCAAATGGAAAGGATATCATATAGAAGCACAAGTGAAGTTGGATCATCCATCACATTCAATAGAGGATTTTCTCAGTCATCATCATCAAACAAAATTGATTCAGCTAATGAAGTTTGA 2820 0.4064 MIRVWLVVLIVLSNGFSSTGVGVDNSTVPAFVNIGVLYSFNTSVGRIVKIAIEAAVKDVNSDPSILGNTKLKVSLQEDSKYRGFLSIAEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTAFSDIFQMTAIADLVKFYGWREVIAVYGDDDHGRNGIGALGDKLAQRRCKISFKAPMTPEATREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWIATNFLTSWLDIDSPLPSDTMDNIQGVVTLRMYIPDSKLKRQFVSRWKNLTDGKTANGSLGLSTYGIFAYDTVYVLARALDSFFKKGNQITFSHDSKLSELHGDNMHLDAVKIFNEGNLLRKSIYEVNMTGVSGQFKYTSDGNLANPAYEIINVIGTGTRRIGYWSNHSGLSVVTPEALSSKSPNHSTPSPKLLTVFWPGETTQRPRGWVFPNNGRMLKIGVPKRVSYREFVTQVQATDMFKGFCIDVFVSAVNLLPYAVPYKFVSYGDGNSNPSNTELVRMITTGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKIESNAWAFFMPFTPMMWTVTAIFFLLVGAVVWILEHRLNDEFRGPPKRQVVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIESLINSKEPIGYLQGSFTRTYLIEEIGIDESRLVPLKTPEETTKALEKGPQKGGVAAYIDERAYIELFLSSRCDYTIVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEVDRLNLKSFWGLYLVCGLACSLALLIYLFQTLRQYNKHRPEEVESPGQGSGSSRLRTFLSFVDEKEEIVKSRSKRRQMERISYRSTSEVGSSITFNRGFSQSSSSNKIDSANEV. 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03032 939 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 889 IPR015683 -
Seca11g03032 939 CDD GluR_Plant 470 812 - -
Seca11g03032 939 Gene3D - 582 711 - -
Seca11g03032 939 FunFam Glutamate receptor 467 583 - -
Seca11g03032 939 Gene3D - 50 400 - -
Seca11g03032 939 MobiDBLite consensus disorder prediction 919 939 - -
Seca11g03032 939 Pfam Bacterial extracellular solute-binding proteins, family 3 527 812 IPR001638 -
Seca11g03032 939 PIRSF IGluLR_plant 1 938 IPR017103 -
Seca11g03032 939 SUPERFAMILY Periplasmic binding protein-like I 29 464 IPR028082 -
Seca11g03032 939 FunFam Glutamate receptor 709 816 - -
Seca11g03032 939 FunFam Glutamate receptor 583 713 - -
Seca11g03032 939 Gene3D - 467 581 - -
Seca11g03032 939 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Seca11g03032 939 Gene3D - 759 819 - -
Seca11g03032 939 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Seca11g03032 939 FunFam Glutamate receptor 148 303 - -
Seca11g03032 939 Gene3D - 148 425 - -
Seca11g03032 939 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Seca11g03032 939 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Seca11g03032 939 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03032 Seca-Chr11 60159646 60165093 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03032 5 914 Ion Channels AT3G51480 60.131 0.0 1174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03032 K05387 - gmx:100788917 1642.86