Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03029 ATGGATATTTCTCATCCTTTCTTAATTTTCTTTAATGTTCTTTTTTTATTCACAATGACATTTTACAAGGATTTGCATTCCCTCGTTATGCTTGCAGCAAAATACAACATGAGCAAAGTTTGGCTTCTTGCCCTTGTGATTTTCTATTGTTGCTTTCCTTCAAAAGGAATCAGCAATGTTTCTTCAAGGCCAAGTGTCGTTAACATTGGAGCAATTTTATCCTTTAACTCAACAATTGGCAGAGTGGCTAAAGTTGCCATAGAAGCGGCAGTGGACGACATAAATTCCAATGAAACGATTCTCCATGGAACAAAGCTTAATATTTCAATGCAGGATACAAAATTCTCCAATGGATTTCTAGGAATCATTGACTCACTTTTGTTGATGGAGAACGATACTGTGGCCATAATTGGTCCACAGTACTCAGTCATGGCTCATGTGATTTCACATATTGCAAATGAGATGCAAGTACCTTTACTATCATTTGCAGCAACAGACCCTACACTGACTTCACTGCAGTTCCCATATTTTATTAGGACAACACAGAGTGATCTGTATCAGATGGCTGCTGTGGCAGAAATTGTTGACCACTTTCAATGGAGAGATGTAATAGCAATTTTCATTGATGATGATCATGGAAGAAATGGGGTAGCTGCATTAGGGGATAAGCTAGCAGAGAAACGTTGCAAAATATCATATAAAGCACCCATAAGGCCAGATAATAATATTAGCCATGAAGAAATAAACAGTGCATTAGTTAAGATAGCTTTAATGGAGTCTAGGGTAATAGTCCTTCACATATTCCCTAGTGTTGGTCTAGATGTACTTCATGTGGCTCAGTCACTTGGCATGATGGGAAGTGGTTATGTATGGATAGCCACTGATTGGCTTTCTACAGTTCTAGATTCAGACCCATCCTTGTCCACATCTTCATCCATGAATGACATCCAAGGTGTTATCACCTTGCGCATGTATACCCCAGACTCAGAAATCAAAAAAGAATTTTTTTCTAGGTGGAACAACCTGAGCCATAAGAAAGATCCTAATCACAACCCTGTTGGGTTAAATACCTTTGGCCTATACGCCTATGACACTGTTTGGGTTCTTGCTTATGCACTTGATGCATTATTAAGCAATGGGGGGACCTTGTCATTTACTAATGATTCAAGTCTAAACATGTTAAGGGGGGACAACCTTCATTTGGATTCTATGGGGGTCTTTGCTAATGGTAGCACGTTGCTTCAAAAAATTTTAGAGGTTAACAGAAAAGGTTTAACAGGCCAAATGATGTTTGATTCAGATGGAAATTTAAGGCATCCATCATATGAAATCATTAATGTGATAGGCACTGGAATTAGAAGAATTGGTTATTGGTCTGATTCCTCTAGCCTACATACTGGGGAAGCTCCTAATTATTCCAATTCCAGTGAAGGACTATATAGTGTCATCTGGCCTGGTCAAACAACTCAAACACCTCGTGGTTGGGTTTTTGCCAGCAATGGAAAACACTTGAGAATTGGAGTGCCACTTAGAATTAGTTACCGTGAATTTGTGTCAAGAATCGAGGGCTCTGAAATGTTTACTGGTTATTGCATAGATGTGTTTACTGCTGCACTGAATTTGTTGCCTTATCCAGTTCCATTCAAGTTTATTCCATTTGGTGATGGTAAAACCAACCCATTAAATTCAGACCTTCTCCACATGATCACAGTTGGTGCCTTCGATGCTGTGGTGGGGGACATTACTATTACCACGAACAGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCAGGGCTAGTGGTTGTGGCACCTATTAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTCACACCATTCACTCCACTGATGTGGTTTGTGACAGGAATGTTTTTCCTAGTGGTGGGAGCTGTTGTGTGGATTTTAGAGCGTCGTGTAAATGATGACTTTAGAGGTCCTGCTAGAAGACAGTTTGTCACCATTATCTGGTTTAGCTTTTCAACCCTATTTTTTGCACATAGAGAGAAAACTGTGAGCACCCTTGGTCGTTTAGTGCTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCCTGACCTCCATCCTTACTGTGGAACAGCTCTCTTCCCCAGTTAAGAGAATTGAAAGCTTAGTAATAAGCAACGACCGCATTGGTTACCTGAGGGGTTCATTTGCTGAAAATTATCTGACTGAGGAGCTCAACATACACAGATCCAGGCTTGTTCCTCTCAACTCCCCATCAGAATATGAAAAAGCCTTGAACGATGGCCCTGCTAATGGAGGTCTTACTGCAATAATAGATGAGCGTGCATACATGGAGCTCTTCCTAGCAACCAGATGTGAATTTGGTATTGTTGGTCAAGAGTTCACCAAGATGGGATGGGGTTTTGGCTTCCCAAGGGAATCTCCCCTAGCAATTGACATGTCAACTGCCATCCTAAAACTATCAGAGAATGGTGACCTTCAGAGAATTCATGACAAATGGCTAACAAGAAGTGCTTGCAGCTCAGAAGGTGCAAAGCAAGGCATAGACCGACTTGAGCTGAAAAGCTTTTGGGGTCTGTTCCTTCTGATTGGCATAGCATGCTTTATTGCTCTCCTTTTCTATGTCATTCGAATGGCCTACTGTTATAGTAGGAACTCCAATAATAACCTTGAAGGCTCATCACGCTCTACTCGTCTTAGATCATTCCTTTCCTTTGTGAATGAAAAAGAAGAGGAAGGCAAATACATGTCAAAGAAAAGACGAAAGGAGAAGTGCTCTTGTAGAAAGGTAGTGCACCAAGATGAATCTTTAGATGGCTTAAGTGTTGGTGTCCATATTGATAATGATGCCATTGCCTAA 2889 0.4053 MDISHPFLIFFNVLFLFTMTFYKDLHSLVMLAAKYNMSKVWLLALVIFYCCFPSKGISNVSSRPSVVNIGAILSFNSTIGRVAKVAIEAAVDDINSNETILHGTKLNISMQDTKFSNGFLGIIDSLLLMENDTVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFIRTTQSDLYQMAAVAEIVDHFQWRDVIAIFIDDDHGRNGVAALGDKLAEKRCKISYKAPIRPDNNISHEEINSALVKIALMESRVIVLHIFPSVGLDVLHVAQSLGMMGSGYVWIATDWLSTVLDSDPSLSTSSSMNDIQGVITLRMYTPDSEIKKEFFSRWNNLSHKKDPNHNPVGLNTFGLYAYDTVWVLAYALDALLSNGGTLSFTNDSSLNMLRGDNLHLDSMGVFANGSTLLQKILEVNRKGLTGQMMFDSDGNLRHPSYEIINVIGTGIRRIGYWSDSSSLHTGEAPNYSNSSEGLYSVIWPGQTTQTPRGWVFASNGKHLRIGVPLRISYREFVSRIEGSEMFTGYCIDVFTAALNLLPYPVPFKFIPFGDGKTNPLNSDLLHMITVGAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFTPLMWFVTGMFFLVVGAVVWILERRVNDDFRGPARRQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKRIESLVISNDRIGYLRGSFAENYLTEELNIHRSRLVPLNSPSEYEKALNDGPANGGLTAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFGFPRESPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLELKSFWGLFLLIGIACFIALLFYVIRMAYCYSRNSNNNLEGSSRSTRLRSFLSFVNEKEEEGKYMSKKRRKEKCSCRKVVHQDESLDGLSVGVHIDNDAIA. 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03029 962 FunFam Glutamate receptor 741 848 - -
Seca11g03029 962 Gene3D - 183 463 - -
Seca11g03029 962 Pfam Bacterial extracellular solute-binding proteins, family 3 525 845 IPR001638 -
Seca11g03029 962 CDD GluR_Plant 502 844 - -
Seca11g03029 962 FunFam Glutamate receptor 499 615 - -
Seca11g03029 962 Gene3D - 501 614 - -
Seca11g03029 962 SUPERFAMILY Periplasmic binding protein-like II 480 846 - -
Seca11g03029 962 SMART GluR_14 505 846 IPR001320 GO:0015276|GO:0016020
Seca11g03029 962 FunFam Glutamate receptor 183 342 - -
Seca11g03029 962 CDD PBP1_GABAb_receptor_plant 68 464 IPR044440 -
Seca11g03029 962 PIRSF IGluLR_plant 35 951 IPR017103 -
Seca11g03029 962 Pfam Ligand-gated ion channel 846 877 IPR001320 GO:0015276|GO:0016020
Seca11g03029 962 Gene3D - 792 851 - -
Seca11g03029 962 FunFam Glutamate receptor 615 745 - -
Seca11g03029 962 Gene3D - 615 751 - -
Seca11g03029 962 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 80 96 - -
Seca11g03029 962 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 141 169 - -
Seca11g03029 962 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 362 374 - -
Seca11g03029 962 SUPERFAMILY Periplasmic binding protein-like I 62 495 IPR028082 -
Seca11g03029 962 Gene3D - 85 439 - -
Seca11g03029 962 Pfam Receptor family ligand binding region 85 449 IPR001828 -
Seca11g03029 962 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 67 905 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03029 Seca-Chr11 60082487 60087672 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03029 37 931 Ion Channels AT1G42540 59.454 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03029 K05387 - gmx:100789442 1566.21