Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03024 ATGAGCAAAGTTTGGCTTCTTGTCCTTGTGATATTATACCATGGCTTTCCTTCAATGGGAATCAGCAACGTTTCTGAAAGACCAAGTACTGTTAACATTGGGGCAATTTTATCTTTCAATTCAACCGTTGGAAGAGTGGCTAAAGTTGCCATAGAAGCAGCAGTGCATGACATAAATTCCAATCCAACAGTTCTCAATGGAACTAAGCTTAATGTTTCTATGCAGGACACAAAATTGTCCACTGGATTTCTTGGAATCATTGACTCATTTTTGTTGATGGAGAATGACACAGTGGCCATAATTGGTCCACAGTACTCAGTCATGGCTCATGTGATATCACATATTGCAAATGAGATGCAAGTACCTTTACTATCATTTGCAGCAACAGACCCTACACTGACTTCACTGCAGTTCCCATGTTTTGTTAGGACAACACAGAGTGATCTGTATCAGATGGCTGCTGTGGCAGAAATTGTTGACCACTTCCAATGGAGAGATGTAATAGCAATTTTCATTGATGATGATCATGGAAGAAATAGGGTAGCTGCATTAGGGGATAAGCTAGCAGAGAAACGTTGCAAAATATCATATAAAGCAGCCTTTAGGCCAGATAATAATATTAGTCATGAAGAAATAAATAATGCATTAGTTAAGGTAGCCTTAATGGAATCTAGAGTAATAGTCCTTCACATATACCCTAGTGTTGGTCTAGATGTACTTCATGTGGCTCAGTCACTTGGCATGATGGGAAGTGGTTATGTATGGATAGCCACTGATTGGCTTTCCACAGTACTAGATTCATACCCTTCCTTGACCACATCTCAAGCCATGAATGATATCCAAGGTGTTATCACCTTGCGGATGTACACCCCAGATTCAGAAATCAAGAGAAAATTTACTTCTAGGTGGAGTAACTTTAGCCATGTAAAGGATTTTGGGTTGAACATCTTTGGTCTATATTCCTATGACACTGTTTGGGTTCTTGCTTCTGCACTAGATGCATTTTTTAACAGTGGAGGAACTTTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGGGGAGACACCTTTCATTTGGATTCTATGGGGGTCTTTGTGAATGGTAACATGTTGCCTCAGAAAATTTTAGAGGTTAACAGAACTGGATTAACAGGGCAAATGATGTTTGGTTCAGATGGAAACTTAATGCATCCATCATATGAAGTTATTAATGTGATAGGCACTAGAATTAGGAGGATTGGTTATTGGTCTAATTCCTCTGGCTTACACACAGGGGAAGCTCCTAATCATTCCAATTCCAGTGAAGGACTATATGGTGTCATCTGGCCTGGTCAAACAACTCAAACCCCTCGTGGTTGGGTTTTTTCCAGCAGTGGAAGATCCTTGAAAATTGGGGTGCCACTTAGAATTAGTTACCGTGAATTTGTGTCAAGATCTGAAAGCACTGAAATGTTTGGTGGTTATTGCATAGATGTGTTTACTGCTGCAAGGGACTTGTTGCCTTATCCTGTTCCATACAAGTTTATTCCATTTGGTGATGGTAAAACTAACCCATTAAATACAGAACTTCTCCATAGGGTCACAGTTGGTGAGTTTGATGTTGTGGTGGGGGACATTACCATTACTACAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCTGAGCTAGTTGTTGTGGCAGCTATAAGGAAGTTGAAATCAAGCCCTAGGGCTTTCCTTAGACCATTTACTCCAATGATGTGGTTTGTCACAGGAATGTGTTTCTTGGTTGTGGGAGCTGTTGTTTGGATTTTAGAACGTCGCCTAAATGATGACTTTAGAGGCCCAGCTAGAAGGCAGTTTGTGACCATTATATGGTTTAGCTTTTCAACCCTGTTTTTTGCACATAGAGAGAAAACTGTGAGCACCCTTGGTCGCTTAGTACTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCCTTACCTCCATCCTTACTGTGGAACAGCTCTCTTCCCCAGTTAAGGGAATTGAGAGCTTAGCAACAAGCAATGACCGTATTGGTTACTTGAGGGGTTCATTTGCTGAAAATTATCTGACTGAGGAGCTCAACATACACAGATCCAGGCTTGTTCCTCTTAACTCCCCATCAGAATATGAAAAAGCCTTGAAGGATGGCCCTGCTAATGGTGGTGTTACAGCAATAATAGATGAACGTGCATACATGGAGCTATTCCTATCTACCAGATGTGAATTTGGTATTGTTGGTCAAGAGTTTACCAAGATGGGATGGGGCTTTAGAATTCATGACAAATGGCTAACAAGAAGTGCTTGCAGCTCAGAAGGTGCAAAGCAAGGGATAGACCGACTTGAGTTAAAAAGCTTTTGGGGTTTGTTCCTTCTTATTGGCATAGCATGCTTCATTTCTCTCCTTTGCTATGTTATTCGAATGGCCTACTGCTTTTGTAAACACTCCTCCAGTAATAACCTTGAAGGATCATCACACTCTACTCGTCTTCGATCATTCTTTACTTTTGTGAATGAAAAAGAAGAGGAAGTCAAATACACGTCCAAGAGAAAACGAAGGGAAAAGACATCTAGCGGACGGGTAGCACATGAAGATGGATCATTGGATGACTTCAAGTGTTAA 2661 0.404 MSKVWLLVLVILYHGFPSMGISNVSERPSTVNIGAILSFNSTVGRVAKVAIEAAVHDINSNPTVLNGTKLNVSMQDTKLSTGFLGIIDSFLLMENDTVAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPCFVRTTQSDLYQMAAVAEIVDHFQWRDVIAIFIDDDHGRNRVAALGDKLAEKRCKISYKAAFRPDNNISHEEINNALVKVALMESRVIVLHIYPSVGLDVLHVAQSLGMMGSGYVWIATDWLSTVLDSYPSLTTSQAMNDIQGVITLRMYTPDSEIKRKFTSRWSNFSHVKDFGLNIFGLYSYDTVWVLASALDAFFNSGGTLSFSNDSSLNMLRGDTFHLDSMGVFVNGNMLPQKILEVNRTGLTGQMMFGSDGNLMHPSYEVINVIGTRIRRIGYWSNSSGLHTGEAPNHSNSSEGLYGVIWPGQTTQTPRGWVFSSSGRSLKIGVPLRISYREFVSRSESTEMFGGYCIDVFTAARDLLPYPVPYKFIPFGDGKTNPLNTELLHRVTVGEFDVVVGDITITTNRTKIVDFTQPYIESELVVVAAIRKLKSSPRAFLRPFTPMMWFVTGMCFLVVGAVVWILERRLNDDFRGPARRQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLATSNDRIGYLRGSFAENYLTEELNIHRSRLVPLNSPSEYEKALKDGPANGGVTAIIDERAYMELFLSTRCEFGIVGQEFTKMGWGFRIHDKWLTRSACSSEGAKQGIDRLELKSFWGLFLLIGIACFISLLCYVIRMAYCFCKHSSSNNLEGSSHSTRLRSFFTFVNEKEEEVKYTSKRKRREKTSSGRVAHEDGSLDDFKC. 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03024 886 Gene3D - 147 423 - -
Seca11g03024 886 Pfam Ligand-gated ion channel 737 810 IPR001320 GO:0015276|GO:0016020
Seca11g03024 886 Gene3D - 49 398 - -
Seca11g03024 886 SMART GluR_14 464 779 IPR001320 GO:0015276|GO:0016020
Seca11g03024 886 Gene3D - 573 711 - -
Seca11g03024 886 MobiDBLite consensus disorder prediction 870 886 - -
Seca11g03024 886 SUPERFAMILY Periplasmic binding protein-like I 27 454 IPR028082 -
Seca11g03024 886 FunFam Glutamate receptor 458 574 - -
Seca11g03024 886 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Seca11g03024 886 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Seca11g03024 886 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 321 333 - -
Seca11g03024 886 FunFam Glutamate receptor 147 309 - -
Seca11g03024 886 FunFam Glutamate receptor 574 704 - -
Seca11g03024 886 CDD PBP1_GABAb_receptor_plant 32 423 IPR044440 -
Seca11g03024 886 Gene3D - 457 572 - -
Seca11g03024 886 SUPERFAMILY Periplasmic binding protein-like II 439 774 - -
Seca11g03024 886 Pfam Bacterial extracellular solute-binding proteins, family 3 486 736 IPR001638 -
Seca11g03024 886 MobiDBLite consensus disorder prediction 860 886 - -
Seca11g03024 886 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 840 IPR015683 -
Seca11g03024 886 Pfam Receptor family ligand binding region 49 408 IPR001828 -
Seca11g03024 886 PIRSF IGluLR_plant 1 772 IPR017103 -
Seca11g03024 886 PIRSF IGluLR_plant 771 883 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03024 Seca-Chr11 59913215 59916920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03024 25 864 Ion Channels AT1G42540 56.723 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03024 K05387 - gmx:100790502 1484.54