Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03021 ATGGATCGAGTTGGGATTACAAGATGTGACCACCTGGAATACATATGTTTGTCTGTTAGCAGAGGAGCGATAAATGCATATGTTGCTCTCAAGATCCAGAAAAGTGCAGCTCAATTTGTTCAGGCTGCCCTTCATGAGATTGATATTCTTTCATCCATCGCTGATGGTGCCCCTTCGAATACAAAATTTGTTGTCCAATTAATTGACCACTTTAAGCACACAGGCCCTAATGGCCAGCACCTTTGCATGGTCCTTGAGTTTCTTGGAGATAGCTTGCTTCGTCTAATCAAATACAACCGTTACAAAGGCCTTCCAATGAATAAAGTTAGGGAGATTTCTAAATGCATGTTGACTGGTTTGGATTACTTGCATAGAGAACATGGTATTATCCACACAGACCTAAAACCAGAAAATGTTCTTCTGGTTTCTACCATTGACCCTGCAAAAGACCCTATTAGATCTGGACTCGCCCCAATTTTAGAGAGGCCTGAGCCTGAGGGAAGCATAAATGGTGGAGTTACAAGTCTTATTGAGAAAAAGTTAAAAAGGAGAGCAAGGAGGGCAGTTGCTAAAATATCTGGAAGAAGAGATTCAATGGGAGGAACAGGAGACGCCCCAAAATCTGATAGAAATATTGATGGGATTGACGTGAGATGCAAGGTGGTAGATTTTGGAAATGCATGTTGGGCTGATAAGCAGTTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGTCTGGTTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGTATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACTCCCAAGGTTGGACAAGGTTTTAGTGAAGATGAGGATCACCTTGCCCTTATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTACTGCCGGCACAAAATCGAAGGATTTCTTTGACAGACATGGCGATCTCAAAAGGATTCGAAGACTAAAATTTTGGCCGCTGAACAAATTGTTGATTGATAGATATAAATTTTCAGAGAGTGATGCTCATGAATTTTCAGAGTTTCTTTTACCACTTCTTGATTTTGCACCTGAGAAGCGGCCAACTGCACAGCAGTGCCTCCAACACCCATGGCTCAATGATAGGGAGTCTACAACAAATGAAATGAGAAATGAAGCTAGTGTGGAGAAGGTTGATGTTGGGATGAGCAACCTTAAAATCAAGGTGGGAAAGTGA 1236 0.4199 MDRVGITRCDHLEYICLSVSRGAINAYVALKIQKSAAQFVQAALHEIDILSSIADGAPSNTKFVVQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKGLPMNKVREISKCMLTGLDYLHREHGIIHTDLKPENVLLVSTIDPAKDPIRSGLAPILERPEPEGSINGGVTSLIEKKLKRRARRAVAKISGRRDSMGGTGDAPKSDRNIDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQSGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKIATAGTKSKDFFDRHGDLKRIRRLKFWPLNKLLIDRYKFSESDAHEFSEFLLPLLDFAPEKRPTAQQCLQHPWLNDRESTTNEMRNEASVEKVDVGMSNLKIKVGK. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03021 411 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 207 390 - -
Seca11g03021 411 FunFam Serine/threonine-protein kinase SRPK 81 379 - -
Seca11g03021 411 Gene3D Transferase(Phosphotransferase) domain 1 56 379 - -
Seca11g03021 411 Pfam Protein kinase domain 218 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03021 411 Pfam Protein kinase domain 25 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03021 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Seca11g03021 411 Gene3D Phosphorylase Kinase; domain 1 25 87 - -
Seca11g03021 411 ProSiteProfiles Protein kinase domain profile. 1 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03021 411 SUPERFAMILY Protein kinase-like (PK-like) 25 385 IPR011009 -
Seca11g03021 411 SMART serkin_6 6 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03021 Seca-Chr11 59599796 59604458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03021 27 380 EF-hand Containing Proteins AT5G22840 50.495 2.03e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Seca11g03021 Pkinase 2.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03021 K08832 - gmx:100811724 672.159