Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03015 ATGGGAGGCTTTTTGCATACTTTTGAGTTTGATCAGGGGAGGATGGCCAAGAAAGTTCATGCCCATAAGAGACAAAATGGTGGCCTGGAAAGTCCTCGAAAGATCATGGAGCTGCAAGTAGAAACATCTCAGATCCACTATCCAGAAAAAGAATTACCATACTCTTGCCAAGTAGAAGATAGCTGGTCAAAGAATAATAGTTACTCAAATGCGGCTTCAGTGAAAAAACTGAACAATGAGGAGCAGTCCAAACAATCAGGCACCAGAAATAATGCACCAAGCCTTGTGGCAAGGTTGATGGGGGTAGACATGATGCCATTAGACACTAAATCTATTGTTCCACTTCCATCAGATGAAAGCATAAGTGAAAATATGGAGAGGAAGTTTTCAAAGAAGGGAATGAACAAAAGGGGTCCAGTTAGTAAGGGTTCCTCCAACTTTCATTCTTATAGCCAGATAGAACTTGATTCATTTTATCAAGACTTTGAGGATGATGGATGGGGACAGAATTTTGGAAAACCAAGGCCAAGGGAACATCCTCAGGAAGAGGAACTCCAGAAATTCAAGAAAGAATTTGAGGCATATCAAGCAGCAAGGATTAAGGAGTGTTCAAAGGTTGTTCAAATTGGAAGTGTTTCTATGCGAATTCTTGCTCAAGAGAACCTGAACAAGGAAAAGGTACCACATATTGCACATTCTCAGAGAGAGGCAACAGAGAAATCTGCAGAACTTGATAGCCACTCAATTACAACTAAGCTACCAAATGATTATATTGTGGAGTCAATCTCAACTAAGAAAAAAGAAACCTTTCCTTCAAGGAATAAAACACTAAGTAGAGAATGTGAGGAGTCTCTAATGATGAAATCTAGAAGCAGATTAGATATATGTTCTTCTCCCACTCAGATAGTTATCTTGAAGCCTGGTCCTGATAGGATTTGCAATGGCAACAATGAAGAGAATTGGATCAGTTCATCAGGTACTTTACATGGGAGAGATAGTATAGAAAATTTTCTTGAGGAGGTGAGAGAGCGGTTGAAATGTGAACTTCAAGGGAAAACTGTCATAAAGGGTTCTGTGTGTAGAGGAAATGGAATTGATACAGCTTACAATGAAAAACCATTTGATCCTAAAGAAATAGCTCATCATATAGCAAAAGAGGTAAGAGAAAGTGTGACCAGAGATGCTGAAGCAAATTTACTCAACTCAGAATCAACAAGATCAAAAAACCAACAACAGAAGCCTTTTCCCACTAGGTGGGGTAGGCTACCAGAATTTTTCAACAGAGATACCAGGAAATTCTTGTCAGAGAGGCTAAGAAATGTTCTGAAAAGTGAAGCACATTTTGACATTCCTGAAATGAATTGTGGGAACTCAAGGTCATATATATTAGAAAATAAAAGAGATAGATTAAAGCAAGTAGGGGATGATAAAAAGTGTGCAAGTGACATAAGCCACTGGAGAATTTTGAAAGAGAAAGAAAATATACAAACAGGTTCCTTCAGGCATGGACTAGATGACAATTTATTGATCCACAAGGAGCTGTCCCCTAGTAACCTTGTAAGATCCTTGTCTGCTCCTGTATCAGGAACATCATTTGAGAAGCTTCTTCTAGAGGACCGCCACATCTTAACGGGTGCCCTTATTAGGAGGAAGCTTGAAGCTGTTGAAACAATCCATGTTGATGTTAAAAAACAGAAGAAAGATAGATTTAATATTAAAGAAAAAGTTTCCCATTTTAAATATACTTTTGGTCTAAGAAGAAGGTTATTTGGTAAGACGGTTCAGTCAATGGTAGAAGCACGTGGCAATGAAGTGAGAGATATCAGAAGTGGACCAACTGTTCTTATGAAATATGGTGAGAGGCATGAGAACTCCACTGAGGTACCTCCTAGTCCCGCATCTGTTTGCAGCTGTACTCAGGAAGAGCTTTGGAGACAGATTGAATATTTAAATCCAATATCAAATCCAGATGTATCTTCAGTAGACAATATTGTTATGTCTGAGGATTTTAGAGATATTGGTTCTGGTTTGAATGAGAAAAGGAGGCAACTCAGTCGACTTGAGTCTGATGGCACTGAGGACTATACAACAAAGCAGAAGCCTTTTGAGTCTGAATTAGTTCAATTGGAGGATCCAGCAGAATCTTACATAAGAGATCTGCTTGTTGCTTCTGGTCTGTACTTTGGTTCATGGGATAAATGTTTAACAAGATGGGACTCATTTGAAAAGCCTATTGTTGGTAACTCCGTTTTTGAAGAAGTGGAAGAATCTCATAAGAAATTGGTCAAGGAGAATGAAAGATCTAAAAAGGATCAAAATGAGAGTAAGTTAGAGCACAAGGTTTTACTTGATTTATTAAATGAGGCACTTTCCATTGTTCTTGGACCACCTTTGACATTGCCTAGACTCAGAAGGAAACTAAGCAATTCCTCCATTCAGCCTCCACCATGTGGAAAGGAACTACTAAAGTTAGTATGGGACATTATTTGTGTTTCTCTATATCCTTCATCTAACACATCTCCTTATTCACTTGATAGTTGGGTGGCACATGATTTGAGATCCATCTCATTGTCTGGACTAACGAATGATCCAATCAATATAATGGAAAGGGAGATAGCATGTCTAATCACTGATGATTTGGTTGAAGAATTCATAAAGAATATGCTCTTAGGTGTAGTGTAG 2682 0.3852 MGGFLHTFEFDQGRMAKKVHAHKRQNGGLESPRKIMELQVETSQIHYPEKELPYSCQVEDSWSKNNSYSNAASVKKLNNEEQSKQSGTRNNAPSLVARLMGVDMMPLDTKSIVPLPSDESISENMERKFSKKGMNKRGPVSKGSSNFHSYSQIELDSFYQDFEDDGWGQNFGKPRPREHPQEEELQKFKKEFEAYQAARIKECSKVVQIGSVSMRILAQENLNKEKVPHIAHSQREATEKSAELDSHSITTKLPNDYIVESISTKKKETFPSRNKTLSRECEESLMMKSRSRLDICSSPTQIVILKPGPDRICNGNNEENWISSSGTLHGRDSIENFLEEVRERLKCELQGKTVIKGSVCRGNGIDTAYNEKPFDPKEIAHHIAKEVRESVTRDAEANLLNSESTRSKNQQQKPFPTRWGRLPEFFNRDTRKFLSERLRNVLKSEAHFDIPEMNCGNSRSYILENKRDRLKQVGDDKKCASDISHWRILKEKENIQTGSFRHGLDDNLLIHKELSPSNLVRSLSAPVSGTSFEKLLLEDRHILTGALIRRKLEAVETIHVDVKKQKKDRFNIKEKVSHFKYTFGLRRRLFGKTVQSMVEARGNEVRDIRSGPTVLMKYGERHENSTEVPPSPASVCSCTQEELWRQIEYLNPISNPDVSSVDNIVMSEDFRDIGSGLNEKRRQLSRLESDGTEDYTTKQKPFESELVQLEDPAESYIRDLLVASGLYFGSWDKCLTRWDSFEKPIVGNSVFEEVEESHKKLVKENERSKKDQNESKLEHKVLLDLLNEALSIVLGPPLTLPRLRRKLSNSSIQPPPCGKELLKLVWDIICVSLYPSSNTSPYSLDSWVAHDLRSISLSGLTNDPINIMEREIACLITDDLVEEFIKNMLLGVV. 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03015 893 Coils Coil 751 771 - -
Seca11g03015 893 MobiDBLite consensus disorder prediction 73 93 - -
Seca11g03015 893 Pfam Domain of unknown function (DUF4378) 715 883 IPR025486 -
Seca11g03015 893 MobiDBLite consensus disorder prediction 400 416 - -
Seca11g03015 893 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 889 - -
Seca11g03015 893 MobiDBLite consensus disorder prediction 400 420 - -
Seca11g03015 893 Pfam DUF761-associated sequence motif 91 106 IPR032795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03015 Seca-Chr11 59447895 59453951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03015 74 888 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 35.503 5.27e-122 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03015 - - gmx:100810825 1132.09