Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03012 ATGCCGAAGGCCAAAGCTGACACCAAACCCGCTGATAACCGGTTGAAGCGCAAGGGCGCTGGAGCCGGAAGGAAGCAGACGAAGAAAGCCGCTAAGGATCCGAACAAGCCGAAGAGGCCTCCCAGTGCTTTCTTTGTTTTCATGTCTGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCAAACAACAAATCGGTCGCTGTTGTGAGTAATCGATTTTTTCTTGTGCAGAGATTTCTATACTGTTATTTACTTATGTGTTATTCTCGAATTCTGAATCCTTATTATTTGTGGTTCACTGTGAATAATCAATTAGGTTGGGAAAGCTGGCGGTGA 333 0.4535 MPKAKADTKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVSNRFFLVQRFLYCYLLMCYSRILNPYYLWFTVNNQLGWESWR. 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03012 110 MobiDBLite consensus disorder prediction 1 42 - -
Seca11g03012 110 Coils Coil 110 110 - -
Seca11g03012 110 Pfam HMG (high mobility group) box 37 68 IPR009071 -
Seca11g03012 110 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 70 IPR031061 -
Seca11g03012 110 SUPERFAMILY HMG-box 24 66 IPR036910 -
Seca11g03012 110 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 110 IPR009071 -
Seca11g03012 110 Gene3D High mobility group box domain 20 72 IPR036910 -
Seca11g03012 110 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03012 Seca-Chr11 59350190 59351134 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca11g03012 HMG_box 1.8e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03012 K25507 - gmx:100499992 130.568