Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03009 ATGGGTCTCTGCTTATCCTCTCTCTTTCGCTCTGCACCTGATCACTCCTCTTCCCTCAACAAACCTCAGTATTCAGGTTCAGCGTCAGCGAGCACTGACGTGGGGTTCTCAGCGACGACGAGCAGCGCAGGAAGGAGCCAATTTTCAGAGCTTGCAAGTGGAAGCTTTGGCGGTGGTGAAGGGTCTTTTCCTCTTCCTTCTCCAAATGGCCAGATTCTGGAAAGGCCAAACATGAAGGTGTTCAGTTATGCAGACCTCAAATCTGCCACCAAGAGCTTCAAATCCGATACATTGCTCGGTGAAGGTGGTTTTGGAAGAGTTTACAAAGGGTGGTTGGATGAGAAGACCCTCACACCCGCCAGAGCAGGCTCTGGTATGGTCGTTGCCATAAAAAAATTGAACCCCGAAAGCACGCAAGGATTTCAAGAATGGCAGTCAGAAATCAACTTTTTGGGAAGACTTTCTCACCCCAACCTGGTCAAGCTATTGGGTTATTGTTGGGATGATGAGGAGCTTCTTCTTGTGTATGAGTTCATGCCAAAGGGAAGCTTGGAGAATCATCTCTTTAGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGAATTAAAATAGCTATTGGTGCAGCTCGGGGCTTGGCTTTCTTGCACACTTCTGAAAAAGTCATATACAGAGATTTCAAGGCCTCAAATATTCTACTAGATGGGAATTACAATGCAAAAATCTCAGATTTTGGCTTGGCTAAATTGGGGCCTTCTGGGGGAGAATCACATGTAACTACTAGGGTCATGGGCACGTATGGTTATGCTGCACCAGAATACATTGCAACAGGGCACTTGTATGTAAAGAGTGATGTGTACGGCTTTGGTGTAGTACTGCTTGAAATTCTGACAGGCATGAGGGCACTGGATACAAAGAGGCCAACAGGGCAACAAAACTTGGTTGAATGGTTGAAGCCTTGTCTCTCCAACAAGAGAAAGTTGAAAACCATCATGGATGCTAGGATAGAGGGTCAATATTCACCCAAGGCAGCATTGCAAGCAGCACAACTTACCCTGAAATGCCTAGAACCTGACCCTAAACAACGTCCTTCTATGAAAGAGGTGCTTGAGGCATTGGAAGGGATTGAAGCTATTAAGGTCAAATCCAAGGAATCTAAGAACCTCAATTCCCATCAACCTCAACTTCATGCTAGACAGAGAGTTGTGAAAGTATAG 1221 0.4562 MGLCLSSLFRSAPDHSSSLNKPQYSGSASASTDVGFSATTSSAGRSQFSELASGSFGGGEGSFPLPSPNGQILERPNMKVFSYADLKSATKSFKSDTLLGEGGFGRVYKGWLDEKTLTPARAGSGMVVAIKKLNPESTQGFQEWQSEINFLGRLSHPNLVKLLGYCWDDEELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGGESHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDTKRPTGQQNLVEWLKPCLSNKRKLKTIMDARIEGQYSPKAALQAAQLTLKCLEPDPKQRPSMKEVLEALEGIEAIKVKSKESKNLNSHQPQLHARQRVVKV. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03009 406 Pfam Protein tyrosine and serine/threonine kinase 96 374 IPR001245 GO:0004672|GO:0006468
Seca11g03009 406 MobiDBLite consensus disorder prediction 11 30 - -
Seca11g03009 406 CDD STKc_IRAK 99 377 - -
Seca11g03009 406 Gene3D Transferase(Phosphotransferase) domain 1 179 401 - -
Seca11g03009 406 ProSiteProfiles Protein kinase domain profile. 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g03009 406 ProSitePatterns Protein kinases ATP-binding region signature. 99 132 IPR017441 GO:0005524
Seca11g03009 406 SUPERFAMILY Protein kinase-like (PK-like) 70 375 IPR011009 -
Seca11g03009 406 PANTHER OS01G0588500 PROTEIN-RELATED 37 378 - -
Seca11g03009 406 MobiDBLite consensus disorder prediction 385 406 - -
Seca11g03009 406 FunFam Serine/threonine-protein kinase PBS1 179 393 - -
Seca11g03009 406 FunFam Serine/threonine-protein kinase BIK1 62 178 - -
Seca11g03009 406 Gene3D Phosphorylase Kinase; domain 1 77 178 - -
Seca11g03009 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03009 Seca-Chr11 59104106 59108732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03009 79 374 Glycoside Hydrolase AT3G07070 52.013 8.15e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca11g03009 PK_Tyr_Ser-Thr 4.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03009 - - gmx:100794193 665.611