Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g03003 ATGGAGGAGAGTAAAAAAACCAAAGGAAAACAAAAGATAGAGATTAAGAAGATTGATAAAGAAAATGATCTTTCTAGTACTTTCGTGAAGCGAAAATATAGCATTCACAAGAAGGCTTGTGAGTTATCAACACTTTATAGGGCTAGGGTTGATATACTCATGTTTTCTCCATGTGAAAGATCATTCTATTATGGGGTTCCTTCTCTTCGATTGTTGACAAGGACAATTTTAGATGATGAGAACCCTTTAAAAGGTGTCAACTATGATCAACTTGTAGAGGATCACAAGAGATCAGAGATCGATGAACTCAATAAAAAACATGATGCACTTCAAGATCAGTTGTATGTTGAGAAAGCACATGAGAAAAACCTAAAGGACATATTGAAGACAAGGAAAAACGATGGCTGGTGGGAGGCCAAAGTACAAGGTCTTAGTTGTGAACGTGTTGAGGAAATGGAAGCAAGACTTTTAGAATTACATGAAAAATTGTCAAATGAACTTCCAATCATGTGTGGAGGCAATGCTTATCATGGTATGGTCTCTTCAACTTTATTTTGCCTTAGCTTCGATTAA 573 0.3595 MEESKKTKGKQKIEIKKIDKENDLSSTFVKRKYSIHKKACELSTLYRARVDILMFSPCERSFYYGVPSLRLLTRTILDDENPLKGVNYDQLVEDHKRSEIDELNKKHDALQDQLYVEKAHEKNLKDILKTRKNDGWWEAKVQGLSCERVEEMEARLLELHEKLSNELPIMCGGNAYHGMVSSTLFCLSFD. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g03003 190 CDD MADS 9 65 - -
Seca11g03003 190 Coils Coil 93 113 - -
Seca11g03003 190 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Seca11g03003 190 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca11g03003 190 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca11g03003 190 PANTHER MADS BOX PROTEIN 10 162 - -
Seca11g03003 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 62 IPR002100 GO:0003677|GO:0046983
Seca11g03003 190 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca11g03003 190 Gene3D - 20 133 IPR036879 GO:0003677|GO:0046983
Seca11g03003 190 Coils Coil 146 166 - -
Seca11g03003 190 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca11g03003 190 SUPERFAMILY SRF-like 8 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g03003 Seca-Chr11 58886016 58886588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g03003 5 189 Type I MADS-box Gene Family AT5G60440 33.690 1.47e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g03003 SRF-TF 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g03003 - K12412 gsj:114420861 143.665