Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02999 ATGGGAGGAGACAGTACCGTTGATGAGGGTGTGACAGAATTGAAGGGCTCCGGAGGGGTCAACATCAACGTTCGGTGTTCGAATGGTTCTAAGTTTTCGGTTCAGATTGCCCTTGAATCCACTGTGGGATCGTTTAAGGATCTCGTCGCCCAGAACTGCGACATCCCCGCCCAACAACAGCGCCTCATTTCCAAGGGTCGGATCTTGAAGGACGATCAAACTCTTCAAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTGCACCTACCAATACAACTGGTGGGACCAACAGTAGTGGCACTGATACCACAACGAATAATGCCAGAGGTGCTGGAGCTAATGATGGTGGGGGTTTAGGTGGGCTTGGTTTTGGAGCTTCACCCTTCTCTGGACTTGGTATCAATGGGGGCAATGGCTTATTTGGCGAGGGATTTCCAGATCTTGAGCAAATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAAATAATGAACACTCCTGCTATGCAGAATCTAATTAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCGGAGCTAGCACATATACTTAATGATCCCAGCACTCTCCGCCAGACACTTGAAGCTACAAGGAATCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGGGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACGATGGCTGGTAATACAGGAAACAATAATGCAGCAATTTCAGGGACTCATGGTGGCCAGGCCAGGGGCAGGGACCAATCAACAAATCCCTCTACTGCTAATTCTGAAACAACTGCTGGTTCACCCTTACCAAATACTAACCCGCTCCCTAATCCGTGGTCCTCTACTGGAACAGCTGGAGGTGCCCAAAATAATACCAGAAGGTCAACCACTGGTGGGGATGCTAGGCAGCAAGCACCTACTGGCTTAGGAGGGCTTGGTTTGCCAGACCTTGAAGGCATGCTGGGTGGAAGTGGTATGCCAGATCCTGCTTCATTGATCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATCCTTTCCAACCCACAAACTGTGAATCAGATCCTTGGTGCTAATACTGATCAGCGTGGCATTCCTGATTTAAATTCTCTTAGAGAAGCGATGCAAAATCCAGAGTTCCTTCGATTGTTTTCTTCACCTGAGACATTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTCCTGTCTCAGCTTGGTCAGCAACAATCAACACGATTACTATCAATTTTTTTTTTATTGGTAGAATCATTGAACAACATGGGGTTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAACGAGCCACCGGAGCAATTGTATGCCACCCAGCTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGGGCTCTTATTGCTACCTCAGGGAATGTTCATGCTGCAGTTGAACGGCTTTTGGGGAACTCTGGTCAGTAG 1635 0.4618 MGGDSTVDEGVTELKGSGGVNINVRCSNGSKFSVQIALESTVGSFKDLVAQNCDIPAQQQRLISKGRILKDDQTLQSYGLEADHTVHLVRGFAPTNTTGGTNSSGTDTTTNNARGAGANDGGGLGGLGFGASPFSGLGINGGNGLFGEGFPDLEQMQQPFISNPNLMREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNNNAAISGTHGGQARGRDQSTNPSTANSETTAGSPLPNTNPLPNPWSSTGTAGGAQNNTRRSTTGGDARQQAPTGLGGLGLPDLEGMLGGSGMPDPASLIQLMQNPAISQMMQSILSNPQTVNQILGANTDQRGIPDLNSLREAMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTRLLSIFFLLVESLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ. 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02999 544 CDD UBA_PLICs 502 540 - -
Seca11g02999 544 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Seca11g02999 544 Gene3D - 484 544 - -
Seca11g02999 544 FunFam Ubiquitin domain-containing protein DSK2b 190 246 - -
Seca11g02999 544 Pfam UBA/TS-N domain 502 538 IPR015940 -
Seca11g02999 544 SMART uba_6 502 540 IPR015940 -
Seca11g02999 544 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Seca11g02999 544 SMART ubq_7 20 91 IPR000626 GO:0005515
Seca11g02999 544 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 496 541 IPR015940 -
Seca11g02999 544 MobiDBLite consensus disorder prediction 268 345 - -
Seca11g02999 544 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Seca11g02999 544 FunFam Ubiquitin domain-containing protein DSK2b 485 543 - -
Seca11g02999 544 MobiDBLite consensus disorder prediction 93 116 - -
Seca11g02999 544 Gene3D - 188 246 - -
Seca11g02999 544 PANTHER UBIQUILIN 20 539 IPR015496 -
Seca11g02999 544 Gene3D - 12 105 - -
Seca11g02999 544 SMART CBM 193 232 IPR006636 -
Seca11g02999 544 SMART CBM 347 400 IPR006636 -
Seca11g02999 544 SMART CBM 403 438 IPR006636 -
Seca11g02999 544 SMART CBM 143 180 IPR006636 -
Seca11g02999 544 CDD Ubl_Dsk2p_like 20 92 - -
Seca11g02999 544 SUPERFAMILY UBA-like 498 540 IPR009060 GO:0005515
Seca11g02999 544 MobiDBLite consensus disorder prediction 93 117 - -
Seca11g02999 544 MobiDBLite consensus disorder prediction 268 366 - -
Seca11g02999 544 SUPERFAMILY Ubiquitin-like 16 107 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02999 Seca-Chr11 58777043 58785586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02999 20 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 3.00e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02999 K04523 - gmx:100776447 767.689