Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02990 ATGAGGATCAAAGTTGTTGCCACCAAGAAGGGTCCCTCATCTCACAATGACTCTGAAGGTTTCCCTAGCAGACAAGAAGCTTCTGAAGCTGCTCACAGGGAAATCATTCCCTTTGAAGAACCTCTTGAAGTTCAGCCTCTGTCCACTGAACTTCCACCAAAACCAGCTGCCACTGATTCCAAACAACCATCCTCCTCATCAAAGAGCAGTGACTCCAATATTTCAATTCTAAGGGTCAGAAGATCTGAAAGGAACAAAGCTAACCTTCCAACTATTGGAAATAACCCAGATGATCCTATTGGAATCAACTCTCCTCCACCCTCACCTCCCTCTCAACCAAAACCAAGCTCACAAGCCACAAGCAGCAATGAAGAGGATCTCAATGACCCTCAAGAAGAAAGTCCAGAGGAAAGTGATCCTTCTGAAGTTATAGAAGATGTCAACAAAGACCTATTTTCTGAAAAAGGTATGATGGAGAAGTTCTATGATAAATGGGATGGAAAAAGCATCATCCCTGGAAGAGTGTTTCTGCTAAGAGAAATAAGAAAAGAAGGATGGGACGTTGGTCACTTTCTCCAGAAGCAAGGGTGGGGAAGCTTTCTGCTGATCAGAGAACCCATTTATCCAAGGCTCATCAAGGCATTCTATGCTTCTACAAGCAATTACAGAAGTGATGGTAATTCTCTGGTCGTTGAGCTGAAAGGGTCAACCATGATTCTAACCCCTGAAACCATAGAAGAAGCTTTAGGTATTCCTCACTGTGATAATAGGCTATACGATGACAATTGGTATGCTTCTGCAGGCATAACCAAACAAGAAATCACCAGGAAAATACTTAGCCAACTTGACTCACCTCTCCAATCAAGCAAATTGATTCCTTTTTGCAGATTATTCCACAAAATCTGCTATCTCTCCCTTCTTCCAAGAGCCGGAACATTTGAAAGAGTAACTGACCAGGACCTTCTAGTAATGCACCATCTTCTTGCTGAAGAAGAATTCCTTGATACCTGCACCCACTTTGACAGAAGCAATGTAAGGAAAATGAAAATTGGAAAAATAGATCCTTCTCAGTTCTTCTCAAGTGACAGTGAGGATGAGGTGCCAAGTGAACCTCCCAGTGAATCAAGAACCAAGTTGAAGAAGAAGGAAATTCTTCAAACCTTCTCCAAAAAAAGAAAAGGGATCATCACAGAAGGAGAAGCTAGCAAAATCCAGAAAACTGGTTCTTCTGAAGAAAATTCAGAAATACCCCCTCCTAGCCCCTTTTCTCATGAAGAAGTTGAGCCAATCACTCCTGTAGGTGGTGGAGAAGATACAACATCCCAGCTGCAGGCTCCTTCTGAAGAAAGAAATGATGTCTCTATGACTGAGGCCAAGGATACTTCTGCAGAAGAAACGACCATGGAAGGCACGGGGATTAATTCTGCAGAAGGAATGACTGCAAACACTTTAGCAATGCTTGCTACAAGCTATCATGATAGCTCTTCTCATGACACAGTCATACCTCAAGCCCAGTCCCCCTCACACAATGTGCCAATGGATGAGGATGTTGCAGAAGAAACCCATCATGCTTCATCTCCTGCTAAAACTGAAGAACTTCATCTGACATATGAAGATGAAGATGAAGAACCTAAAGGTGAAGCACAATCTGTTCCTTCTGTGGGAACCCTTGGCACAGAAATGGTCAACCAATTTCTTGCTTCTCCCATTCTAGATGCAGGGATACCTCCTTCTGCACCCATAAGGGATACCCTCCCAAACATATCTGCCACTCTCTCATCTATGGAAACTTACCTCCAGCAGCTTAGCACTGAAAAGAAAACTATTCCTTCTCCTCCAAACCCTGAGAAGGTTCATGAAGCTGCACCAGAACCTACTGAACCATCTGATATTCTCTCTTCCTCCTCCATTGAAAGGCAAGTAAGGATGATCAAGGCTGACATTAAGAAGCTCTTCTCAAATGTCAATGTCTTGCAAAACTCTGTAAATGAAATGATAGAGAGGTTTACACAACATCAGTTTTGGTTCAACAACTATGTTCTTCCTATCATTACTCCTCAGGCTCCTCAAATGCCATTCACTCCCTTTCAGCCACCTCAGAACATCTTGCAGCCTATAACTTCATCATCTTCTGACCATTCCTCTCCTTCCTGTTCTGTAAATGATGGAACAAGTTTTCCATTGCCTGATTGTATTAAACCATTGTTAACTTGGGTTTATATCATCCTATCTTCAATTGTTGTAGTGAGCGAGTCGACCGACAGATTGGTGTGTAGAAAGAGATGCAGCATTCCTGACGTGGGTCTTCTTAGCTCATCATTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTGCCAGACATGCCTATTGTTTACTCCAATGATGCCTTCTTGAGATTGACAGGTTATGCAAGAGATGAAGTGTTGGGCCGTAACTTTAACAGGTTATCATCTGTTCTGAATGCTTCTGGCAAGTCCCAATGCCAACTAGCACTTGGATTTTCTCTTAATCTTCACCAAGATTACAAGTATTCTTTTCCAGTCAAGCCTCTTCAGGCTCTACACCCAAGTATTCTCTTCAGGCTCTACAACCAAGTATTCTTTTACAGTCAAGCCTCTTCAGGCTCTATAACCAAGTATTCTTTTACAGACAAGCCTCTCCAGGCTCAAAGACAATTTTTACAAAGAAATATGTCTAAGCTTTTAAACTACACAAGTTTGAAGCTTAAACAGATACAATTACAAGGATGCTGCTACAAAGCCGCCACTGTTGTTGCTGCAAAGACTGTGTTGCAGAGATTTCCTCAGTGGTGTACGTGCAGCAGAGAACGCTTGACTCAGCAGAATTTCAGAGATGTCTTCACAAACTTCAGCAAAGAGTGCCACGTCATTAATGAGACTTCAGACGGCTTCAACACTTCAGACAGGTTGATCCTTCAGAAGGCTTAA 2970 0.4222 MRIKVVATKKGPSSHNDSEGFPSRQEASEAAHREIIPFEEPLEVQPLSTELPPKPAATDSKQPSSSSKSSDSNISILRVRRSERNKANLPTIGNNPDDPIGINSPPPSPPSQPKPSSQATSSNEEDLNDPQEESPEESDPSEVIEDVNKDLFSEKGMMEKFYDKWDGKSIIPGRVFLLREIRKEGWDVGHFLQKQGWGSFLLIREPIYPRLIKAFYASTSNYRSDGNSLVVELKGSTMILTPETIEEALGIPHCDNRLYDDNWYASAGITKQEITRKILSQLDSPLQSSKLIPFCRLFHKICYLSLLPRAGTFERVTDQDLLVMHHLLAEEEFLDTCTHFDRSNVRKMKIGKIDPSQFFSSDSEDEVPSEPPSESRTKLKKKEILQTFSKKRKGIITEGEASKIQKTGSSEENSEIPPPSPFSHEEVEPITPVGGGEDTTSQLQAPSEERNDVSMTEAKDTSAEETTMEGTGINSAEGMTANTLAMLATSYHDSSSHDTVIPQAQSPSHNVPMDEDVAEETHHASSPAKTEELHLTYEDEDEEPKGEAQSVPSVGTLGTEMVNQFLASPILDAGIPPSAPIRDTLPNISATLSSMETYLQQLSTEKKTIPSPPNPEKVHEAAPEPTEPSDILSSSSIERQVRMIKADIKKLFSNVNVLQNSVNEMIERFTQHQFWFNNYVLPIITPQAPQMPFTPFQPPQNILQPITSSSSDHSSPSCSVNDGTSFPLPDCIKPLLTWVYIILSSIVVVSESTDRLVCRKRCSIPDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYSNDAFLRLTGYARDEVLGRNFNRLSSVLNASGKSQCQLALGFSLNLHQDYKYSFPVKPLQALHPSILFRLYNQVFFYSQASSGSITKYSFTDKPLQAQRQFLQRNMSKLLNYTSLKLKQIQLQGCCYKAATVVAAKTVLQRFPQWCTCSRERLTQQNFRDVFTNFSKECHVINETSDGFNTSDRLILQKA. 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02990 989 ProSiteProfiles PAS repeat profile. 797 819 IPR000014 -
Seca11g02990 989 MobiDBLite consensus disorder prediction 435 451 - -
Seca11g02990 989 MobiDBLite consensus disorder prediction 356 383 - -
Seca11g02990 989 MobiDBLite consensus disorder prediction 605 632 - -
Seca11g02990 989 Gene3D PAS domain 770 842 - -
Seca11g02990 989 MobiDBLite consensus disorder prediction 491 510 - -
Seca11g02990 989 MobiDBLite consensus disorder prediction 402 417 - -
Seca11g02990 989 MobiDBLite consensus disorder prediction 491 532 - -
Seca11g02990 989 CDD PAS 793 820 IPR000014 -
Seca11g02990 989 MobiDBLite consensus disorder prediction 396 479 - -
Seca11g02990 989 SUPERFAMILY PYP-like sensor domain (PAS domain) 788 823 IPR035965 -
Seca11g02990 989 Pfam Putative plant transposon protein 194 332 IPR046796 -
Seca11g02990 989 MobiDBLite consensus disorder prediction 58 76 - -
Seca11g02990 989 MobiDBLite consensus disorder prediction 369 383 - -
Seca11g02990 989 Pfam PAS domain 784 824 IPR000014 -
Seca11g02990 989 MobiDBLite consensus disorder prediction 126 141 - -
Seca11g02990 989 MobiDBLite consensus disorder prediction 465 479 - -
Seca11g02990 989 MobiDBLite consensus disorder prediction 1 144 - -
Seca11g02990 989 MobiDBLite consensus disorder prediction 513 532 - -
Seca11g02990 989 PANTHER PROTEIN TWIN LOV 1 745 821 - -
Seca11g02990 989 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02990 Seca-Chr11 58188018 58194597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02990 750 838 AGC Kinase Gene Family AT3G45780 35.955 7.61e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02990 - - cam:101495131 130.183