Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02973 ATGGAATATTCTCATTCATCAGATGAAGCTAGAGATACAGCAGCAGCAATGATGAAAAAGAAGAGGAGCAAAAAGAAAAGGTTCAGCGACAAACAAATCCAATCATTGGAATCTATGTTTGAGACAAAGTCAAGGCTCGAACCTCTAAAGAAACTGCAGTTGGAGTTGGCAACAGAGCTTGGGTTGCAGCCACGACAGGTTGCTATATGGTTTCAGAACAAAAGAGTACTATCATACCCTGCAATTTAG 249 0.4056 MEYSHSSDEARDTAAAMMKKKRSKKKRFSDKQIQSLESMFETKSRLEPLKKLQLELATELGLQPRQVAIWFQNKRVLSYPAI. 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02973 82 SMART HOX_1 21 81 IPR001356 GO:0003677
Seca11g02973 82 Pfam Homeodomain 22 76 IPR001356 GO:0003677
Seca11g02973 82 MobiDBLite consensus disorder prediction 1 17 - -
Seca11g02973 82 CDD homeodomain 28 75 IPR001356 GO:0003677
Seca11g02973 82 Gene3D - 4 78 - -
Seca11g02973 82 MobiDBLite consensus disorder prediction 1 29 - -
Seca11g02973 82 ProSiteProfiles 'Homeobox' domain profile. 19 75 IPR001356 GO:0003677
Seca11g02973 82 SUPERFAMILY Homeodomain-like 8 75 IPR009057 -
Seca11g02973 82 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 19 75 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02973 Seca-Chr11 57656266 57656514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02973 21 76 Homeobox Transcription Factor Family AT2G46680 67.857 1.34e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca11g02973 Homeodomain 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02973 K09338 - gmx:100797862 86.2705